Rhododendron vialii: 131319437
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Entry
131319437 CDS
T09330
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131319437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131319437
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131319437
mRNA cycle factors
Common to processing body (P body) and stress granule
131319437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
131319437
NCBI-ProteinID:
XP_058205654
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All DBs
Position
3a:complement(4590643..4599404)
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AA seq
976 aa
AA seq
DB search
MSAPMAKASDLSSTDRVQRLYAKNVELENRRRKAAHARIPSDPNAWQQMRENYEAIVLED
NAFSEQHEIEYALWQLHYRRIDELRGHLSAALASAGSTPSQNGKGPTRTGPDRITKIRSQ
FKTFLSQASGYYHDMMLKIRAKCGLPLGYDQETQILSQDGNISTEMKRGLISCHRCLIYL
GDLARYKGLYGEVESKARDFAAASSYYMQASSLWPSNGNPHHQLAILALYSGDELVAIYR
YFRSLAVDYPFSTARDNLIIAFEKNRQSYSQLPGNAKASVKIVPTRMTAKRRGKGDTSVQ
KDSRAEANLVKERASSVPVTFKAFSIRFVRLNGILFSRTSLETFEEVYSFVRGDLLDLLG
SGANEEYTFGSDAAECRLVIVRLIAILIFSVHNVNRETENQSYAEILQRSLVLQNVFTAI
FEFMGLILERCVQLNDPSTSYLLPGIMVFVEWLACRQDIAGGSEVDEKQASARSLFWNHF
VSFLNKLLSSGLPAINEDGDETCFSDMRRYDEGETANRLALFEDVEMRGFLPLLPAQLIL
DFSMKYPFGSDGGNKEKSARVQRIIAAGKALANVIRVGQQTLYYDSKSKRFALGIEPQMS
DDCSLFGSWEIPRENGIGQEIQAESQLNLGPRLCIEREEDDEEIVFKPVLSEKNPDGVAS
KFTSSQVFGSSVNSSRVVDLESHIGGVVSVPIDGFLLKDTYSTCSRQPTPLANITPPYFQ
PSASTWLGEQVSANEQLTKLSLSENGFPMKLGLQHHLIPQQSFNLNDTNTYPDTVLPSKF
DSIMTLGQVVDSLSTKPSPMMPAVMRKNPVSRPVRHAGPPPGFNSIPTKLVDEFSLSGVT
SKNENAPMDDYRWLDGYQFTSSTNQGIGINNDFINQSAGNGYHQPVTQINSSLGMADLNK
KNSSLGMVSFPFPGKQMPSFEVQAEKQKGWNDYQFLESLSLHQKQQQQLQKGNQQSFFAL
PEQYQGQTFLEDGFFE
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctccaatggctaaagcttcagatctttcatcaacagatcgtgttcaacgtctt
tatgctaaaaatgttgagttggagaatagacgtcgtaaagcagcacatgccagaattccc
tcagaccccaatgcatggcaacagatgcgagagaattatgaagcaattgttcttgaagac
aatgctttctctgaacagcatgaaatagagtatgctttgtggcagttgcattacaggaga
attgatgagttacgaggacacctcagcgctgctcttgcatcagcgggatcaaccccctct
cagaatgggaaaggtcccacacgaactggacctgatcgaatcacaaaaatacgttcccag
tttaagacatttctttcgcaggcatctggctattatcatgacatgatgttgaaaattaga
gctaaatgcggtctacctcttggttatgatcaagaaactcagattctgtctcaagatgga
aatatatccaccgaaatgaagagaggcttgatatcctgccaccgttgtttgatttatctt
ggggatcttgctcgttacaaagggttatatggggaggtagagtccaaggctcgagatttt
gcagcagcgtcaagctactatatgcaagcctcttcactttggccttcaaatggtaaccct
catcatcagcttgctatattggctttatactcgggggatgaattggtggccatttacaga
tactttcgaagtctagcagttgattaccctttttccacagccagggataatttgattatt
gcatttgagaagaaccgtcagagttattcccagctccctggaaatgccaaagcatctgtt
aagatagtccctacgcggatgactgcaaaaaggagaggaaaaggtgacaccagtgttcag
aaagatagtagagcagaggctaatcttgtcaaggaaagagcatcaagtgtaccagtgact
tttaaagctttcagcattcgttttgtccgtctaaatggcattcttttctcaaggacaagc
ttggagacatttgaggaggtttactcttttgtaagaggtgatttgctggatcttcttggt
tctggtgcaaatgaggagtacacttttggttcagatgctgctgagtgtaggctagtgatc
gttagactgatagcaattctcattttcagtgttcacaatgtgaatagggaaacagagaat
cagtcctatgctgaaattttgcaacgttcgctagtgcttcagaatgtatttactgctatt
tttgagttcatgggcctcatcctcgagagatgtgttcagttgaatgatccttcaacgagc
tatttgttgcctggcatcatggtttttgtggaatggttagcttgtcggcaagatattgca
ggtggctctgaagtggatgagaaacaagctagtgctaggtcattgttttggaatcacttt
gtttcgtttttaaacaagctcttgtcaagtggattgcccgctattaatgaggatggagat
gaaacatgcttttccgatatgcgtagatatgatgaaggtgaaactgccaaccggctagca
ttgtttgaagacgttgaaatgagaggattcctccctcttcttcctgcccaactaatcctt
gatttttcgatgaaatatccatttggaagcgacggaggtaataaggagaagagcgcacgt
gttcagaggatcatagcggctggaaaggctcttgctaatgtgattcgtgttgggcaacag
acactttattatgattccaagtcgaagagatttgctttaggtattgagccacaaatgtcg
gatgattgttcactttttggttcttgggaaattcccagagaaaatggtatagggcaagaa
attcaagcagagagtcaactaaatcttggaccaaggttatgcattgaaagggaagaggat
gacgaggagattgttttcaaaccggttttgtctgagaagaatcccgatggagttgcttca
aaatttacctcttctcaggtttttggatctagtgttaatagctccagggtggttgatttg
gagagtcacattggcggtgttgtttcagtcccaattgatggttttcttttgaaggatact
tacagtacatgttcaaggcaacctacacctcttgctaacattactcccccgtattttcag
cccagtgcttcaacttggcttggagaacaggtttctgcaaatgaacaactcaccaaattg
agcttatcggaaaatgggtttcctatgaaacttggattgcaacatcatttgattcctcag
cagtctttcaatctcaatgacacaaatacctatccggatactgtactgcctagtaaattt
gattctattatgacattaggacaagttgtggatagcttgtcaacgaagccttcgccaatg
atgcctgcagtaatgagaaagaatccagtgagcagacctgttaggcatgcaggtccccca
cctggattcaactccatcccaaccaaacttgtggatgagttctccttgtctggtgtaaca
tcaaagaacgaaaatgcaccaatggatgactataggtggctagatggatatcagtttaca
tcatcaacaaaccaaggcatcgggatcaataatgatttcataaatcagtcagcgggaaat
ggataccaccagcctgtaactcagatcaatagctctttggggatggccgatctaaacaaa
aaaaatagctctttggggatggtaagctttccatttcctggaaaacaaatgccatcattt
gaagtccaggcagaaaaacagaaaggctggaatgattatcagtttttggaaagtctcagt
ctacatcaaaagcagcagcagcagcttcagaaaggaaatcagcagtcatttttcgccctg
ccagagcagtatcaaggacagacttttttggaagatggtttctttgagtga
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