Rhododendron vialii: 131319438
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Entry
131319438 CDS
T09330
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131319438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131319438
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131319438
mRNA cycle factors
Common to processing body (P body) and stress granule
131319438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
131319438
NCBI-ProteinID:
XP_058205657
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All DBs
Position
3a:complement(4600855..4610521)
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AA seq
957 aa
AA seq
DB search
MSGPMAKSSDLSARECVQGLYTKNVELENRRRKAAHARIPSDPNAWQQMRENYEAIVLED
NAFSEQHEIEYALWQLHYRRIDELRGHLNSALASAGSTTSQNGKGPTRPGPDRITKIRSQ
FKTFLSEASGFYHDVMLKIRAKCGLPIGFDQENQILSQDGNISAEMKRGLISCHRCLIYL
GDLARYKGLYGEAESKTRDFAAASSYYMQASSLWPSSGNPHHQLAILALYSGDELVAIYR
YFRSLAVDNPFSTARDNLIIAFEKNRQSYSQLPGNAKASVKMVPARMTAKGRGKGDKSVK
KDSSAESNLVKERASSIPETFKAFCIRFVRLNGILFTRTSLETFEEVYSIVRGDFLVLLA
SGPHEEFTFGSDAAECRLVIVRLIAILLFSVHNVNRETENQSYSEILQRSLLLQNVFTAI
FEFMGLILERCIQLNDPSTSYLLPGIMVFVEWLACRQDIAVGSEVEEKQASARSFFWNHF
VSFSNKLLSSGFSFIKEDGAETCFFNMSRYDEGETANRLALFEDIELRGFLPLLPAQLIL
EFSMKYPFGSDGGSKGKSARVQRIIAAGKALANLIHVGQQTLYFDYKSKKFAFGAEPQMS
DDYSLSGSWDIPSENGRGQEISAESQLNLGPRLGIERDEEDEVIVFKPVLSDKDPDGVAS
KSPSSQVLGSSVDMESHAGTAVSVPNDGFLLQDASNTCSRPPISLANITPPYFQPSASTW
LGEQFSANEQLTQLSLSENGFPMTRELQHHLIPQQSSNPNATNKYAETVVPCKFDSIMPL
GKVVDSLSMKPSPMMPVGMRKNPVSRPVRHAGPPPGFNSFPSKLLEESSLSGATFKNENP
PVDDYRWLDGYQFTSSTNQGIGINYDSMNHSAANGYHHPVSKINSSLGMVSFPFPGKQMP
AHQVQAEKQEGWNEYQFLESLSLHQKQPQLQEGNPKLFVALPEQYRGQTFLENGFFV
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtccaatggctaaatcttcagatctttcagcaagagaatgtgtccaaggtctt
tacactaaaaatgttgagttggagaataggcgtcgtaaagcagcacatgcccgaattccc
tcagaccccaatgcatggcaacagatgcgagagaattatgaagctattgttcttgaagac
aatgctttctctgaacagcatgaaatagagtatgctttgtggcagttgcattacaggaga
atcgatgagttacgtggacacctcaactctgctcttgcgtcagccggatcaaccacctct
cagaatgggaaaggtcccacacgacctggacctgatcgcatcacaaaaatacgttcccag
ttcaagacattcctgtcggaagcatctgggttttatcatgacgtgatgttgaaaattaga
gctaaatgtggtctaccgattggttttgatcaagaaaatcagattctgtcccaagatggg
aatatatccgctgaaatgaagagaggcttgatatcctgccaccgttgtttgatttatctt
ggggatcttgctcgttacaaagggttatatggggaggcagagtccaagactcgagatttt
gcagcagcatcaagttactatatgcaagcttcttcgctttggccttcaagtggtaaccct
catcatcagcttgctattctggctttatactcgggggatgaattggtggccatttacaga
tattttcgaagtctagcagttgataaccctttctccacagcgagggataatttgattatt
gcatttgagaagaaccgacagagctattcccagctgcctgggaatgccaaagcatctgtt
aagatggtccctgcaaggatgactgcaaaagggagaggaaaaggagacaaaagtgttaaa
aaagattctagcgcagagtctaatcttgtcaaggaaagagcatcaagtataccagagact
tttaaagctttctgcattcgttttgttcgtctaaatggcattcttttcacaaggacaagc
ttggagacatttgaggaggtttactctatcgtaagaggtgattttctcgtgctacttgct
tctggtccacatgaggagtttacttttggttcagatgctgccgagtgtaggctagtgatt
gttagactgattgcaattctcctattcagcgttcataatgtgaacagggaaacagagaac
cagtcctattctgaaattttgcaacgttcactactgcttcagaatgtatttacagctatt
tttgagttcatgggtctcatcttagagagatgcatccagctgaatgatccttcaacgagc
tatttgttgcctggaatcatggtttttgtggaatggttagcttgtcggcaagatattgca
gttggctctgaagtggaggagaaacaagctagtgctaggtcgtttttctggaatcacttt
gtttcattttcaaacaagctcttgtcaagtggattctcctttattaaggaggacggagct
gaaacatgctttttcaatatgagtagatatgatgaaggtgaaacagccaaccggcttgca
ttgtttgaagacattgaattgagaggattcctgcctcttcttcctgcacaactaatcctg
gaattttcgatgaaatatccatttggaagcgacggaggcagcaaggggaagagcgcacgt
gttcagagaattatagcagctggaaaagctcttgctaatttgattcatgttgggcaacag
acactttattttgattacaaatcaaagaaatttgcttttggtgctgagccacaaatgtcg
gatgattattcactttctggttcttgggatatccccagtgaaaatggtcgagggcaggaa
atttcagcagagagtcaactgaatcttggaccacggttgggtattgaaagggacgaagaa
gacgaggtgattgttttcaaaccggttttgtctgataaggatcctgatggggttgcttca
aaatcaccctcttctcaggttttgggatctagtgttgatatggaaagtcatgctggcact
gctgtttctgtcccaaatgatggtttcctcttacaggatgcttccaatacatgttcaagg
ccaccaatatctcttgctaacattactcccccgtattttcagccaagtgcttcaacgtgg
cttggggaacagttttctgcaaatgaacaactcacccaattgagcttgtcagaaaatgga
tttcctatgacacgtgagttgcaacatcatttgattcctcagcagtctagcaatcccaat
gccacaaataaatatgcagaaactgtagtaccttgtaaatttgattccattatgccatta
ggaaaagttgtggatagtttgtcaatgaagccatcaccaatgatgccagtcggtatgaga
aagaatcctgtgagcagacctgttaggcatgcaggtcccccacctggattcaactctttc
cctagcaaacttctggaagagtcctccttgtctggtgcaacattcaagaatgaaaatcca
cccgtggatgattatagatggctagatggatatcagtttacatcatcaacaaaccaaggc
attgggatcaattatgattccatgaatcattctgcagcaaatggataccaccatcctgta
agtaagattaatagctctttggggatggtaagctttccctttcctggaaaacaaatgcca
gcacaccaagtccaggcagaaaagcaggaaggctggaatgagtatcagtttttggaaagt
ctgagtctacatcaaaagcagccgcagcttcaggaaggaaatccaaagttgtttgttgcc
ctgccggagcaatatcgaggacagacttttttggaaaatggtttctttgtgtga
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