Rhododendron vialii: 131320064
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Entry
131320064 CDS
T09330
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131320064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131320064
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131320064
Spliceosome [BR:
rvl03041
]
Complex C
Other components
Step II factors
131320064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
S1
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Sigma54_activ_2
nSTAND3
GIPC1_GH2
ABC_tran
AAA_16
TsaE
nSTAND_NTPase5
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
131320064
NCBI-ProteinID:
XP_058206605
LinkDB
All DBs
Position
3a:32320053..32325362
Genome browser
AA seq
1234 aa
AA seq
DB search
MGVAAKEDDGLKKLEYLSLVSKVCTELESHLGFGDKVLAEFITEMGRNCEKVEDFDAQLK
QNGAEMPDYFVRTLLTIIHAILPPNPKSKSVKESKRESNKSSFPGLGVGDSRERVKELER
EIEMETKDLDRERRERRSNRDVEERGDRDERHRGDRDKEDRGRGRYRDRDKHDRHGRDGY
EDDGDNGRRERKNDAERQDRHRRDGYEEDGNNKGDDDRRERRNDRHRRDGYEEHGDNKGD
DDRRERRNDRNRRDGYERDEGHDRKERRNNGPRSDEPELYQVYKGRVSRVMETGCFVQLS
EFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVHVKVISVLGQKLSLSMRDVDQNTGEDLL
PLKKRSGDDDAFRANPSGLNGGGPKIRTGLSGIRINDEDVAVPSRRPLKRMSSPEIWEAN
QLVAAGVMSVRENPMYDEEGDGVLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVK
IFKNPEGSLSRAAALQSALIKERREVRDQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQ
ELRGVGLSAYDMPEWKKDAFGKSLTFGQRSKLSIQDQRQSLPIAKLKRELIQAVHDNQVL
VVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY
AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYAVVMLDEAHERTIHTDVLFGLLKQL
VKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTYPVEILYTKQPESDYLDASLITV
MQIHLTEPEGDILLFLTGQEEIDHACQCLYERMKGLGKNVPELIILPVYSALPSEMQSRI
FEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASA
KQRAGRAGRTGPGKCYRLYTESAFHNEMSPASVPEIQRINLGTTTLTMKAMGINDLLSFD
FMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDE
ILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFE
NFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTKVRKAITAGFFFHGARKDPQEGY
RTLVENQPVYIHPSSSVFQRQPDWVVYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVA
DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcgctgcgaaggaagacgatggtttgaagaaattggagtacctttcgttggtc
tcaaaggtatgtactgaactcgagtcacacttagggtttggtgacaaggtcttggccgaa
ttcatcaccgagatgggccggaactgcgaaaaagtcgaggatttcgacgcccagttgaag
caaaacggcgccgagatgcccgactacttcgtccgcacgcttttaactattatccacgcc
atcttgcccccaaaccctaagtccaaatccgtaaaggaatccaagagagaaagcaataaa
tcgagttttccaggtctgggggttggtgatagtagagagagagtcaaagagctagagaga
gaaatcgagatggaaaccaaggatctcgatagggagaggagagagaggcgtagcaacaga
gatgtggaggaaaggggtgatagagatgaaaggcataggggtgatagagacaaagaggat
agaggaagggggaggtatcgggatagggataagcacgacaggcatgggagagatgggtat
gaagatgatggggataatggtaggagggagagaaagaatgatgcggaaagacaggatagg
cataggagagatgggtatgaagaagatgggaataacaaaggggatgatgataggagggag
agaaggaatgataggcatcggagagatgggtacgaagaacatggggataacaaaggggat
gatgataggagggagagaaggaatgacaggaataggagagatgggtatgaacgtgatgag
ggtcatgataggaaggagagaaggaataatgggcccaggtcggacgagccggaattgtat
caggtgtataagggaagagtgtcgagagtgatggaaacgggttgttttgttcagctcagt
gagtttaggggtaaagagggtctggtccatgtttcccagattgcgactcggaggattggc
aacgctaaggacgtagtgaaacgcgaccaggaggttcatgtgaaggtgatatctgttttg
gggcagaagttgagtctttcgatgagggatgttgatcagaataccggtgaagacctactt
ccgctgaaaaagaggtcgggcgatgatgatgcttttagggcaaatccttcgggattgaat
ggtggggggccaaagatcaggacaggtctttctgggattagaatcaatgacgaagatgtt
gctgtcccgtcacgccggccgttgaagaggatgagttcgccagagatatgggaagctaat
cagctggtggctgcaggagttatgagtgttagggagaaccccatgtatgatgaagaaggc
gatggtgttttatatcaagaagagggtgctgaggaagagcttgaaatcgagctaaatgaa
gatgaaccagcctttttgcagggacaaagccggtactctatggacatgtcacctgttaag
attttcaagaatcctgaagggtccttgagtcgcgcggcagcccttcagtctgctctcata
aaggagcggagggaagtgagggaccagcagcagagaacaatgcttgattctattccaaaa
gatctcaatcgtccttgggaagatccgatgccagagacaggcgagaggcatctagcacaa
gagcttaggggtgttggtttatcggcgtatgacatgcctgaatggaaaaaggatgctttt
gggaaatccctaacttttggtcagagatcaaagctttctatccaggaccagaggcagagt
ttgcctattgccaaattgaagcgtgaattgattcaggctgtgcatgacaatcaagttttg
gttgtaattggtgagacaggttcagggaaaacaacacaagtcacgcaatacctagctgaa
gcagggtacactaccaagggaaagattggttgcactcagcctcgtagggtggctgcaatg
tccgtggccaaaagggttgccgaagaatttggctgccgattgggtgaggaagttggatac
gccattcgtttcgaggattgtactggacccgacaccgtgattaagtatatgactgacggt
atgcttctaagagagattttgattgacgagaatttatcacagtatgcagttgtaatgctt
gatgaagctcatgagaggacaatccacactgatgtgctttttggactgctgaagcaactt
gtgaagaggagacctgatcttcgattgattgtcacttctgccacattagatgctgagaaa
ttttcagggtatttctttaactgcaatattttcacaattcctggaagaacttatcccgtg
gagatactctataccaaacagccagaaagtgactacctagatgcatctcttatcaccgtt
atgcaaatccacttgacagaacctgagggtgatatcctcctcttcttaactggtcaagag
gagatcgatcatgcatgccagtgtctttacgagaggatgaaagggttaggaaaaaatgtt
cctgaattaattattttaccggtttacagtgctcttccaagcgaaatgcaatctaggatc
tttgaacctgcacctccaggaaagaggaaagtggtcgtggcaaccaatattgcagaagcc
tctttgaccattgacggtatattttatgtgattgaccctggttttgcaaagcaaaatgtt
tacaatccaaaacaagggcttgattcactggttataactcccatttcacaagcatcagcc
aaacagcgagctggcagagctgggcgaactggccccggaaaatgttatcggctttacacc
gaaagcgcgtttcacaacgaaatgtcccctgcctcagttccagaaatacaaagaattaat
cttggaacgactactcttactatgaaagctatgggaataaatgatctcctatcatttgat
ttcatggacccgccttctccccaagctctcatttctgccatggaacagctgtacagtctt
ggagctctggatgaggaggggcttctgactaaattgggtaggaaaatggcggaatttcca
ttggacccaccattgtctaagatgcttctagccagtgtggatctcgggtgtagtgatgag
attttgacaatcattgcgatgattcagaccggaaacatcttttacaggccaagagagaaa
caagcccaggcggatcaaaagagagccaagtttttccagcctgagggagatcatctgaca
ttacttgctgtttatgaggcttggaaggcgaagaacttttcaggtccgtggtgttttgag
aattttgttcagtctcgttccttgaggagggcacaggatgtccgtaagcagcttctcacc
atcatggacaggtataaattggatgtcgtttctgctgggaagaattttactaaagttcgt
aaggccataactgctgggttcttcttccacggagcaaggaaggatcctcaagaaggttat
agaactctagttgaaaaccaaccagtgtatatacaccccagcagttctgtgtttcagaga
cagccggactgggtcgtctaccatgagctagtgatgactacaaaggagtatatgcgagag
gtcacggtcattgaccctaaatggcttgtggagctagctccaagattctttaaagtggcg
gatcccacaaaaatgagcaaacgcaaacgtcaagaacggattgaaccactttatgacaga
taccatgaacccaactcttggcgtttgagtaaaagacgtgcttga
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integrated database retrieval system
