Rhododendron vialii: 131320605
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Entry
131320605 CDS
T09330
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131320605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131320605
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
131320605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
131320605
NCBI-ProteinID:
XP_058207331
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Position
3a:complement(24097226..24107640)
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AA seq
1280 aa
AA seq
DB search
MKRRNIHQSSHPFDPCPFEAFYYGSWQTVERLRIKDGAITMLLVDGENIVEENVPLSNLR
VRSRKATYSDCTCFLRPGLDVCVLSTLQLTENSSEEEKQEPVWLDAKIKSVERKPHESKC
ACQFYVSFYATQGPLGMTKKALVKEITMVQIDQISIIQKLEWNPCENEHYRWDLTEDCFS
VHIYKLFTGKFSSDLSWLLVVSVLKQLEFYVRSIHNRIVYQISDDDGDGDGDHCSPNSEG
RSNAVNFKLENGISVPVVVPFTPISTPEKGTGSSMDGEELGSSFDVMGLRRSKRRYVQPE
RYMGCDDLSESDIDVVRMYKTYRWEYEEMPLAPLALSIQADHAHQLDDHSEFDKRVVSYA
KDQYEFFFGSQKSLKSLEVESRVSNQCEHPPRLTNQIQDPLQLAIVPVTDNTNQTVHEEN
PLRAEIPGKYSEVVGQAVSKYIYINGTHRVHRRSTSEGDIPESEGTRWGWKSLYKKTRRR
RDRSKPSGRESFRDAGTTNCKRSFSASMYRELIRRCMDNIKSTINKEQPLVIDQWKDFQA
SKFMEQRDGSEVPSKNEEEDSEIEMLWKEMELCMQSNYLNEDSEGSNVEVPNENVQNSSK
HRGQACRHEYKLNEEIGILCRLCGFVLTEIRDVSPSFLQSTVCIPNKGPRNEEDSDHEDV
GLDLACIPATSNIPLSEGEDNVWTLIPELQKKLRFHQKRAFEFLWRNIAGSLVPALMEPS
VNRRGGCVISHSPGAGKTFLIIAFLVSFLKLFPGSRPLVLAPKTTLYTWYKEIIKWDIPI
PVYQIHGGQTYRGEVQRQKLKLSPGAPKPNQDVMHVLDCMEKIQKWLAGPSILLMGYTSF
LTMTREDSKYAHRKYMGQVLRQSPGILILDEGHNPRSTKSRLRKGLMKVETGLRILLSGT
LFQNNFGEYFNTLTLARPSFVGEVLKELDPKYKRRKKGAKTRFSLENRARKLFIDKIAKK
IDSGIAEERAESLNTLKKLTGGFIDVYEGGVSDSLPGLQCYTLMMKSTPYQQELLTKLQN
QRPAYKGFPLELELLITLGSIHPWLIRTTTCSSQYFSEEVLEDLDRYKFDLKFGSKVRFV
MSLIPRCIIRKEKVLIFCHNIAPINLFLEIFEAFYGWRKGEEVLVLQGDLELFERGRVMD
KFEEPGGPSKVMLASINACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQAKEVY
VYQLLATGTLEEEKHTRTTWKEWVSCMIFSEENVEDPSRWQAEKIEDDVLREIVEEDRTT
LFHSIMKNEKASNAVVRGKD
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaggaatatacatcaaagctcacatccatttgatccatgcccttttgaggca
ttttattacggctcatggcaaactgtggagcgcttgcgaattaaggatggggctataacc
atgcttttggtagatggtgaaaatattgtagaagaaaatgtccccctatcaaaccttcga
gtaaggtcgagaaaagcaacttattcagattgcacttgctttttaaggccgggacttgat
gtttgtgtgctatcaaccttacaacttacagaaaattcaagtgaagaggaaaagcaggag
cctgtctggttggatgctaaaataaaatctgtcgagaggaagcctcacgaatctaaatgt
gcttgccaattttacgttagcttctatgctacacaaggccctcttggaatgacaaagaaa
gcacttgttaaggaaatcactatggtgcaaattgatcaaatttccatcattcaaaagctt
gaatggaacccatgtgaaaatgagcactaccgttgggacttaactgaggattgtttctcg
gtgcatatatacaagttattcacaggaaaattctcatctgatctttcatggctacttgtt
gtttctgttttgaagcaacttgaattctacgtaaggtcaatacacaacaggatagtctat
cagatttctgatgatgatggtgacggtgacggtgaccattgttctccaaattcagaaggc
cgttccaatgctgtgaattttaagttagagaatggaatttcagtccctgttgttgtaccc
ttcacaccaataagtactcctgagaagggaactggttctagcatggatggagaagaactg
gggtcatcttttgatgtcatgggtttgcgtcgatccaagcggcgatatgtgcaaccagag
cgttacatgggttgtgatgatttatctgagtctgatattgatgtggttcgaatgtacaaa
acatacagatgggaatatgaagaaatgccattggcgccattggcactatcgatccaagct
gaccatgcacatcagttggatgaccactccgagtttgacaaaagggtcgtttcatatgca
aaagatcaatatgagtttttttttgggtcccaaaaatcactcaaatctctggaggtggaa
tcacgtgtatctaatcaatgcgagcatccaccacgacttactaatcaaatacaagatcca
ctacaacttgctattgttcctgtgaccgataacaccaatcaaactgtccatgaggagaat
ccccttcgtgctgagattcctgggaagtattcagaggtcgttggtcaagcggtttcaaag
tatatttacattaatggtacccatagagtgcatagaagaagtacttctgagggtgacatt
ccagagagtgaaggtactcgatgggggtggaaaagtttatacaagaaaactcgcagaaga
agggataggtctaaaccttcgggaagggagagttttcgcgatgcaggaacaactaactgc
aagagatcatttagtgcgagtatgtacagggagttgataaggagatgtatggacaacata
aaatccacaatcaacaaagaacaaccactagttattgatcagtggaaagacttccaggca
tcgaagttcatggagcaaagggatggtagtgaagtaccctcgaaaaatgaggaagaagac
tcggaaatagagatgttatggaaggaaatggaactttgcatgcaatcaaattatctcaat
gaagacagtgagggttccaatgttgaagtccccaatgagaatgtgcagaattcaagtaag
caccgtggacaagcttgtcgacatgaatacaaactaaatgaagaaataggaattctgtgt
cgcttatgtggctttgtgctcaccgaaataagagatgtctcgccatcatttttgcaatcc
actgtttgtattccaaacaagggcccacgcaatgaagaagattcagatcatgaagatgtg
gggcttgatcttgcatgcattcctgctacttccaacattccgttatcggagggggaagac
aatgtatggaccttaatacccgagcttcaaaagaaattacgcttccaccaaaagagggca
tttgagttcctctggcgtaacattgctggttctttggtaccagctcttatggaaccttca
gttaaccggagaggaggttgtgttatctctcattctcccggggctggtaaaacttttctc
atcattgcattccttgtgagcttcttgaagctattcccaggatcaaggcctttggtcctc
gcaccaaaaacaacgctgtacacctggtacaaagagataatcaagtgggatattcctatt
ccggtttatcaaatccatggtggtcaaacctacagaggtgaagtccaaaggcagaaattg
aagttatcacccggagctccaaaacccaaccaagatgtgatgcatgtgttggactgtatg
gagaaaattcaaaaatggcttgctggcccaagtattcttctgatgggttatacctcattt
ctaacaatgacgcgggaagattcaaaatatgctcacagaaaatatatgggccaagtgttg
cggcagagtcctggtattcttatacttgacgaggggcacaacccaagaagcactaagtca
aggttgaggaaaggtttgatgaaggttgagacagggctcaggattttgctctccggtaca
ttgtttcagaacaactttggagagtatttcaacaccctcactttggcacgaccgagtttt
gtgggtgaggttttgaaggaactggacccgaagtacaagaggaggaagaaaggagcaaaa
acacgcttttcgctcgaaaatagagcaagaaagcttttcattgacaaaattgcaaagaaa
atcgattcaggcattgcagaagaacgagctgaaagtctgaacactttgaagaaattgact
ggcggttttatagatgtttacgaaggtggagtttctgacagccttcctggtttacaatgt
tacactctgatgatgaagtcaacaccttaccaacaagagctgctgacaaaacttcagaac
caaagacctgcttacaaaggatttcctctggaactggagcttctcattactcttggctcc
atacatccttggttgatcagaaccactacatgttccagtcaatacttcagtgaagaagta
ctggaggatcttgataggtacaagtttgatttaaaattcggttcaaaagtgagattcgtt
atgagccttataccgcgatgtattataaggaaagagaaggttctcattttttgccacaac
atcgctccgattaacctatttctagaaatattcgaggcattctatggctggcggaaaggt
gaagaggttttggtccttcaaggggatcttgagctttttgaaagaggaagggtgatggat
aagtttgaggaacctggtgggccctcaaaggtgatgctggcttcgatcaacgcttgtgct
gaaggcatcagtttgactgcagcttcgcgggtgatcttattggactctgagtggaatcct
tcaaagagcaagcaagctattgcgcgagcttttaggcctggtcaggcgaaagaggtgtac
gtgtaccagctcttggctactggaaccctagaagaagagaagcacactaggaccacatgg
aaggaatgggtttcttgtatgatatttagtgaggagaatgtggaggacccgtcacgctgg
caagcagaaaaaatcgaagatgatgtgttgagggagattgtggaagaggatcgaactact
ctgttccattcaataatgaagaatgagaaggcttcgaatgcggtggttagaggtaaagac
taa
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