Rhododendron vialii: 131321682
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Entry
131321682 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131321682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131321682
03009 Ribosome biogenesis [BR:
rvl03009
]
131321682
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131321682
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131321682
Complex B
131321682
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131321682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131321682
NCBI-ProteinID:
XP_058208554
LinkDB
All DBs
Position
4a:complement(43844739..43852583)
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AA seq
1185 aa
AA seq
DB search
MATPEATAASLGPRYAPDDPSLPQPWKGLIDGSTGILYYWNQETGMTQYEKPSSLPPPVP
QGLPPSASPKLANIPGPRMQLNGVVTQPGQQTTHTPQELGQQTNLSQQHPQMMSQVNLLH
SSQFPQPGQQQGSQFGHGMQQQGHLTPQHIGQQTIQSPNQQALLQSGQQMSQQSVQQMQQ
QSMQQLPGQQMPLYQGSQIGPPQGHQFTHPQMQYMAYPQTILPQGQQSSQQPTQNSMQGH
TFPYQQEQKAGPQRRDDADSPQGKQFGFVQPQFQQLSGSSVQALPSGTDSVQMQQMGVQP
SHAQQFSRSSVNIQPTGSLGPMLQSGGNVVHQQHGPRFQNQLDPAMMYSQQPSVPPVNSK
AGFEEPRRAGNEYYFSNSNDVPAMVPQQPKLAAIPMDTRVTGGPAQNITPVFSGLNSVAG
SNLQNMIGHAMGPAFPGLTQMRHPLMTMEPSDVTNLSAVEVYRQQHEVTATGGDVPAPFM
TFEETGFPVEILRELHSAGFSSPTPIQAQTWPIAILNKDIVAIAKTGSGKTLGYLIPAFM
LLRHRRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKGPQLRELE
QGVDIVVATPGRLNDILEMKRIEFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT
LMYTATWPKEVKKIASDLLVDPVQVNIGSVDELAANKSITQYVEVVPQMEKERRLEQILR
AQERGSKVIVFCSTKRLCDQLARSIGRNFGAAAIHGDKSQVERDSVLNQFRSGKSPILVA
TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSDQDWKYAADLV
KVLEGANQQVPQEVREMALRGAPNFVKDRGGPNRFDSPGGDNRGWDSGGRGGTRDGGFGG
RGGMRDGFGGRGGISDGRDGGFGGRGGGRDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGG
MRDGGRGGMRDGSFGGRGGMREGGFGGRGGMRDGGFGGASGGQVGWDRNERGGPHDRYNN
MDGRGRGRGRGRGPFDSRRDVANRGRGRSYSPSPERVRTWGYSRSRSRSRSRSWSRSRSR
SRSWSRSRSPRRSYSRSRSRSRSYERRERRPPRKSKFDQMEPSVPEFGAAPPEASKMSAM
SPGGTKGDAFSGGEPSSQLPVIENVETGHPEAVAADLGNNPVAES
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcaactccagaagcaacagctgcttcccttggtccccgatatgcgcccgatgatcct
agtctaccacagccctggaagggattaattgatggaagcactgggattttgtattactgg
aatcaagaaacaggcatgactcagtatgaaaagccatcctctttgcctcctccagtgcca
caaggcctccctccatcagcttcacctaagctagctaatattccagggcctcggatgcaa
ttgaatggcgttgtgacccagccggggcagcaaacaacacataccccacaagagctggga
caacaaactaacttatcacaacaacatccacaaatgatgtcccaagttaatctactgcat
agctcacaatttccccaacctgggcaacaacagggatcacagtttggacatggcatgcaa
cagcagggacatttaacaccacaacacattgggcaacaaactatacaatcacctaatcag
caggcgttgttgcagtcaggacagcaaatgtctcagcagtcagtgcagcaaatgcagcaa
cagtcgatgcagcagcttccagggcagcaaatgccattgtatcaaggatctcaaattggg
ccacctcaagggcatcaatttacacatccacaaatgcagtacatggcatacccgcagacc
atccttcctcaggggcaacaaagttcacagcagccgactcagaatagtatgcaggggcat
acgtttccctatcagcaagagcagaaagcggggccccaacgcagagatgatgctgattct
ccacaagggaagcaatttgggtttgtccagccacagtttcaacaactcagtgggtcatca
gttcaagctcttccttcagggactgattctgttcagatgcaacagatgggtgttcagcct
agtcatgcacaacagttcagtagatcatctgtcaacattcaaccaactggctctttgggt
ccaatgctgcaaagtggtggtaatgtagtgcatcagcagcatggtcccaggtttcaaaat
cagctggaccctgcaatgatgtatagtcaacaacccagtgtgccccctgtcaattcgaag
gcgggttttgaagagccaagaagagctgggaatgagtattatttcagtaatagcaatgat
gttcctgctatggttccccagcagccaaagcttgctgcaatacccatggacacaagggtt
actggtggtccagcgcaaaatatcacccctgttttttctggactgaactcggtagcagga
tctaacctgcagaacatgattggtcatgcaatggggccagcatttccaggtctgactcag
atgaggcatcctctaatgactatggaaccttctgatgtaactaatctttcggctgtggaa
gtctaccgtcaacaacatgaagttacagcaacgggtggtgatgttccggctccatttatg
acgtttgaagagactggctttcctgtggagatactgagggagttgcattctgcggggttc
tcttctcccacccccattcaggcacaaacatggccaattgcaatactcaataaggacata
gtggctattgccaaaacaggatctgggaaaacgcttggctatctgatcccagccttcatg
cttctaagacaccgtcgaaacaatcctcagaatggcccaacagtgttggtcttagctcca
acacgtgagcttgccacacaaatacaagatgaggccatcaagtttggcagatcttcaagg
gtctcttgcacgtgcttgtacggtggggcacccaagggccctcaattgagagagctggag
caaggagtagatattgttgtggcaactcctggtcggctaaatgacattcttgaaatgaag
agaattgagtttcggcaagtttcacttcttgtgcttgacgaagctgatcgaatgcttgac
atgggttttgaaccccaaatccgtaagattgtaaatgagattcctccccgccgacaaact
cttatgtatacagcgacctggcccaaggaagtgaagaaaatagcaagtgatcttcttgtt
gatccagttcaggtgaacataggcagcgtcgatgagcttgccgcaaataaatctatcact
cagtatgttgaagttgtccctcaaatggagaaggaaaggcgtttggagcagattcttagg
gcccaagagcggggttcaaaagtcattgtattctgttccacaaagaggttgtgtgaccag
cttgctcgtagtattggacgtaactttggtgctgccgcaattcatggtgacaagtctcag
gttgaaagggattcagttctgaatcagttccgttcgggaaagtccccgattttagttgcc
actgacgttgctgcacgaggacttgacataaaagatataagggtcgtgatcaattatgat
tttccaacaggtgtggaggattatgtccaccgaatcggaaggaccgggagggctggggcc
accggagtggcttacaccttcttctctgaccaggactggaagtatgcagctgatctggta
aaagtgcttgagggggctaaccagcaggtgccccaagaagtacgcgagatggctttgcgc
ggtgcacctaattttgtcaaggatcgtggtgggcccaaccgtttcgactctcctggtggg
gataacagaggctgggattctggcggtcgtggtggaacaagggatggtggttttggaggt
cgtggcgggatgagggatggcttcggtggccgtggtggaattagtgatggcagggatggc
ggctttggcggccgtggtggggggagggatggaggctttggcggtcgcggtggaatgagg
gatgggggttttggtggtcgcggtggaatgagggatggtggctttggtggtcgcggtgga
atgagggacggtggtcgcggtggaatgagggacggcagctttggtggtcgtgggggaatg
agggaaggcggctttggtggtcgtgggggaatgagggatggcggctttggtggggcgagc
gggggtcaggttggttgggataggaatgaacgaggaggcccacacgatagatacaacaat
atggatgggcgtgggaggggccgcggcagagggaggggaccatttgacagcagaagagat
gttgcaaaccgggggagaggaagaagttatagccctagtcccgaaagagttcgaacatgg
ggttatagccggagccggagccggagccgaagccgaagttggagccggagcaggagcagg
agccgcagctggtcccgcagccgcagccccagacgcagctacagccgaagccgtagcaga
agccgcagctatgaaagacgtgagaggaggcccccccgcaagtcaaaatttgatcagatg
gaaccctcagtcccagaatttggggcagctcctcctgaagcatccaagatgtctgccatg
tccccaggaggcacaaaaggcgatgcattttctggcggcgagccttcgtcccagttaccc
gttattgagaatgttgagacaggacacccagaggctgtggctgctgacctaggcaacaat
ccagttgctgaatcttaa
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integrated database retrieval system
