Rhododendron vialii: 131321896
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Entry
131321896 CDS
T09330
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131321896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131321896
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131321896
mRNA degradation factors
5'-3' decay
Decapping complex
131321896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
EIF3I
Beta-prop_HPS5
COG2_C
Motif
Other DBs
NCBI-GeneID:
131321896
NCBI-ProteinID:
XP_058208885
LinkDB
All DBs
Position
4a:complement(945067..954790)
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AA seq
1403 aa
AA seq
DB search
MASPGNPNHVVGGSPFDMTKFFNPSPTPNPILQNPNNTSNLPSSYPPPPPASYPPPTGPY
SYSPQLPQFNNNNNNHLQQYPPPPPFTNLHHQRSVPYSPPPLQPPPVQNPNAGAKLMALL
GAPPSNLEKPQQPAVPMVLNPPFSYGSSEFSMPPNVPVLPSMSNLNLAMNMHPGPMRMPS
SKLPKGRHLVGDHVVYDIDSRLEGELQPQLEVTPITKYVSDPGLLLGHQIAVNKTYICYG
LKMGNVRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASENGRVYVWKITEGPDEE
DKPQITGKLVIAIQIVGEGKSVHPQVCWHCHKQEVLVVGIGRCVLRIDTTKVGKGEVCSA
EDPLICDVGNLIDGVQHVGKHEGEVTDLSMCQWMTTRLVSASTDGTIKIWEDRRQQPLVV
LRPHDGQPVNSVTFLTAPHRPDHIVLVTGGPMNREVKIWTLSSEEGWLLPSDAEAWHCTQ
TLDLKSSAESRIEESFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPATTRMDYIAE
FTVTMPILSFTGTSDLLPQGEQNVQVYCVQTQAIQQYALDLSQCLPPPLENMVLEKSDAI
VLHEATSTEGFPTLEPSVSKLTEIPLASSAPKLSIHDSGYENAPMMRHIPSCGSMDATTS
VDFVTSSLECSPIALPTVASNIDISCVASPPLPLSPRLSKNLSGLRSPKTGFEPGPVVDD
RGGDQHIVEYSVDRQMDTVLSNLSDVPSLDDDTKNDENKLVRDDVSAIINQPMKFKHPTH
LVTPSEILMATSSSETDYVTVLKSEGEANIQDVVAHSDMPNVEVDVKVVGETGFNQNNQT
GSQGEPPNPVPGNKDRAFYSQASDLGIEMAKECCALSFDTYNVEESRQLAVATVAQPSNA
EDDILESGKDITAKDVGSAIPAAVPQQVAPTTKGKKQKGKSAQGSGPSSPSPSAFNSTDS
CSEPVVSSSIPSEQAVFTQIMKMQETLNQLKTMQKEAQKQVTMMVSDSVSKEGRRLETSL
GKNMEKAVKANCDALWARFQEEKAKEEKSVRERTQQITGLITNCINKDLPALVEKTVKKE
LSGVGPNIARTIPPIIEKTASSSIAEAFQRGVGDKAVNQLEKSVNSKLEAAVARQIQAQF
QTSGKQALQDSLKNSLEASVIPAFEMSCKAMFEQVDATFQKGMVEHTTAAQQQFDSTLSP
LALALRDTITSASSLTQTLSGELADGQRKLLALAATSKVVNPLVSQLSNGLLGGLHDKIE
APWDPTTELSRLISEHKYEEAFNVALQRSDVSIVSWLCSQVDLPRILLMAPLPLSQGVLL
SLLQQIACDISKDMSRKLTWMRDVAIAINPADPMIAMHVRPIFEQVYQIVNHHHRNLPTS
SSADLSNIRLVLHVLNSMLMTCK
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggaaaccctaaccacgtagtgggaggaagcccattcgacatgaccaag
ttcttcaacccctctccaactccaaaccctattttgcaaaaccctaataacacctccaat
ttaccctcttcttatcctccacccccacctgcttcttatcctccacccactggcccttac
tcctactctcctcaacttccccagtttaacaataataataataaccaccttcaacaatac
cctcctccgcctcctttcactaacttgcaccaccagagatctgtcccttattctccacca
ccacttcaaccccctcctgttcagaaccctaatgctggggccaaactcatggctttactg
ggtgccccaccgtcgaatcttgaaaaaccgcaacaacccgcggtgcctatggttctgaat
ccacctttctcgtacgggtcttcggaattctcgatgcccccgaatgttccggtattgccc
tcgatgtcgaatctcaatttggccatgaatatgcatccgggtcccatgcgaatgccaagt
agcaaactgccaaaggggcgccatttggttggcgaccacgtggtgtatgatattgactcg
agattggaaggtgagttgcagccgcaactcgaggttactcctataacaaagtatgtctcg
gatcctggacttttgttgggtcatcaaattgcggtcaataagacgtatatatgctatgga
ctgaagatgggcaatgtccgtgtccttaacataaacaccgccttgagatcgttgcttaaa
ggtctagctcagagggtcacggacatggctttctttgctgaggatgttcaccttttggct
agtgcgagcgaaaatgggcgggtttatgtatggaagattactgaaggtccagatgaagaa
gataagccacagattacaggaaagttagtaattgctattcagatagtaggagaagggaaa
tctgttcatccacaagtttgttggcattgccacaaacaagaagttctggttgttgggatt
ggacgttgcgttctgagaatcgacactacaaaagttggaaaaggtgaagtatgctcggcg
gaggatcctctaatatgtgatgttggtaatttgattgatggggtccagcatgttggtaaa
cacgagggagaagtgacggatttgtctatgtgccaatggatgactacccgtttggtttct
gcttcaactgatggcacgataaaaatctgggaggaccgcagacagcaaccacttgtggtt
ctgaggccacacgacggtcagcctgttaattctgttacattcttgactgcccctcatcgc
ccagatcacattgttctcgtaacagggggtccaatgaatcgggaagtgaagatatggacc
ttatcaagtgaagaaggctggctgctccctagtgatgctgaggcatggcattgtacccag
acattggacttgaagagttcagctgaatctcgaattgaagagtccttctttaatcaagtt
gtggccctgtctcaagcaggtctcctcttattagcaaatgccaagaagaatgctatatat
gctgtacacttagagtatggtcccaatccggccacaacacgaatggattacattgctgag
ttcactgtaaccatgccgattttaagttttacggggaccagtgatttattacctcagggc
gaacagaatgttcaggtttattgtgtacagacacaggctattcagcagtatgctttggac
ttatcccagtgcttgccgccccctctggaaaatatggtgttagagaaatcagatgcaatt
gtgttgcatgaggcaactagcactgaaggatttcctactctggaaccttctgtaagtaaa
cttaccgagattcctttagctagttcagcacccaaactatccattcatgacagtggctat
gagaatgcacctatgatgagacatatacctagctgtggttcaatggatgccaccacctct
gtggactttgttacttcaagtttggaatgtagtcctatagctttgccaactgtagccagc
aatattgatatttcttgtgttgcatcgcctcctttacctttgagtccgaggttgtctaaa
aacctctccggtttgagaagtccaaaaactggctttgagccaggtcctgtggttgatgat
cgtggtggagatcaacacattgtggaatattcagttgataggcaaatggatacagttctt
tcaaacttgtctgatgtcccttcattggatgatgatacaaaaaatgacgaaaacaagctt
gtacgagatgatgtttctgctattatcaatcagcctatgaagttcaagcacccaactcat
ctggttactccgtcggaaatattgatggctacttcatcttctgaaactgactatgttact
gtactgaagagtgagggagaagcaaacattcaagatgtggttgcccatagtgatatgccc
aatgttgaggtggatgttaaggttgtgggtgaaaccggatttaatcagaataatcaaact
ggctctcagggagaacctcccaaccctgttccaggaaataaagacagagcattttactcg
caggcctctgatcttggcattgagatggccaaggaatgttgtgcattgtcatttgacact
tataacgtagaggaatcccgacaacttgctgttgctactgtagctcaaccttcaaatgcc
gaggacgacatccttgaatccggtaaggatataacggcaaaagatgtcggttcagccata
cctgcagcagttccacaacaggtggcaccaactacgaaagggaaaaagcagaagggtaag
agcgctcaaggatcgggtccatcgtcaccatctcctagtgctttcaattcaacggattct
tgcagtgagcctgttgttagttcaagcattccttctgagcaagctgtctttacacaaatt
atgaaaatgcaggaaacgcttaatcagttaaagaccatgcaaaaagaagcgcagaagcag
gtgacaatgatggtctctgattcagtttctaaagaaggtagaagactggagacctcccta
gggaagaacatggagaaagctgtcaaggccaattgtgatgcattatgggctcgttttcaa
gaagagaaagcgaaagaggagaaatcagtacgagagcgtacacaacaaataacaggtttg
atcactaactgcataaacaaggacttgcctgctttggtggagaaaacagtgaagaaggaa
ttaagtggggttggaccaaacatagctcgcacaattcctcccattattgaaaaaacagca
tcttcatctattgcagaggcattccagagaggagttggcgacaaggcagtcaatcaactg
gagaaatcagtaaattcgaagcttgaagctgctgttgccaggcagatccaagctcaattc
caaacttctggaaagcaagctcttcaggactctttgaagaatagtttggaagcttcagtg
atccccgcctttgaaatgtcatgcaaagccatgtttgagcaagttgatgctaccttccag
aaaggaatggttgaacatacaactgcagctcagcagcagttcgactccactctctctcca
ctggcactcgctttaagggacaccattacttcagcatcgtctctgactcaaacgttaagt
ggggaattggctgatggtcaaaggaagttgttagctcttgccgcaacttcgaaggtggtt
aatccattggtttcccaactgagcaatggacttttgggtggtctccatgacaagattgag
gcaccttgggatccaaccacagagttatctagattgatatctgaacacaaatatgaggaa
gctttcaacgtagcactgcaaagaagtgatgtttctattgtgtcttggttatgctctcag
gttgatttaccgaggatattgttaatggctcctctcccgttgagccaaggagtactgcta
tcacttctgcagcagatagcctgtgatataagcaaggatatgtcccgaaagttgacgtgg
atgagagacgtggcgattgctataaacccagctgaccccatgatagcgatgcatgttcgt
cccatcttcgagcaagtctatcagattgtaaaccaccaccatcgtaaccttcccacaagt
tccagtgctgatctatctaatatccgtcttgtcttgcacgttctcaactccatgttgatg
acctgtaaatga
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integrated database retrieval system
