KEGG   Rhododendron vialii: 131323003
Entry
131323003         CDS       T09330                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
rvl  Rhododendron vialii
Pathway
rvl04120  Ubiquitin mediated proteolysis
rvl04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    131323003
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    131323003
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rvl04121]
    131323003
Enzymes [BR:rvl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     131323003
Ubiquitin system [BR:rvl04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    131323003
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     131323003
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd zf-C3HC4_2 Beta-prop_WDR19_1st Beta-prop_TEP1_C EIF3I WD40_MABP1-WDR62_1st zf-C3HC4 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_RFWD3 zf-C3HC4_3 WD40_like Beta-prop_WDR75_1st zf-RING_2 zf-RING_UBOX zf-C3HC4_4 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 U-box zf-RING_5 DUF1664 YpoC DUF3482 Beta-prop_IFT122_2nd zf-Nse zf-rbx1
Other DBs
NCBI-GeneID: 131323003
NCBI-ProteinID: XP_058210593
LinkDB
Position
4a:7846756..7856776
AA seq 683 aa
MDEASTGAVVPAVKAEEAKPFLPAWAAEGAGTVAVSEVVAGPAPAEIVDRDMLCPICMEI
IKDAFLTACGHSFCYMCIVTHLNNKSDCPCCGLHLTSTQLFPNFILDKLLKKTSVRQISK
NASPVEQFHQSLQQGCEVSVKELDTLLTLLAEKKRKLEQEEAERNMQILMNFLHCLRKQK
VDELNEIQTDLQFIKEDINAVERHRIDLYRARDRYSVKLRMLADDPTATKSWPSSIFKNN
NNNNSGLSSSSRNAQGGMGFGNFQSKKADGKTQLSTLAPQRKDTISGLGSENMSQSGLAV
VRKKRVHAQFNDLQECYLQKRRQLADQPNKQEEREANVIHREGYTAGLTEFQSVLSTFTR
YSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHC
PVVEMSTRSKLSCLSWNKFTKNHIASSDYEGIVTVWDVTTRQSVMEYEEHDKRAWSVDFS
RTEPSMLVSGSDDCKVKIWCTKQEASVINIDMKANICCVKYNPGSSFNVAVGSADHHIHY
YDLRNTSHPLHVFSGHRKAVSYVKFLSNDELASASTDSTLRLWDVKENLPIRTFRGHTNE
KNFVGLTVNSGYIACGSESNEVYVYHKAISRPVTWHKFGSPDLDETDEDAGSYFISAVCW
KSDSPTMLAANSQGTIKVLVLAS
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggacgaggcatcaactggggcagtggtgccggcagtgaaggcggaggaggccaagcct
tttctgccggcttgggcggccgaaggcgctggcaccgtcgccgtgtcggaggtggtggcg
ggtccggcgccggccgagatcgtcgacagggacatgctgtgcccgatttgcatggagata
atcaaggacgcgttcctgacggcgtgcggccacagcttctgttacatgtgcatcgtcact
cacttgaacaacaagagcgattgcccttgctgtgggcttcacctcaccagcacccagctt
ttccccaattttatactcgacaagctattgaagaagacgtctgtgcgccaaatatcaaaa
aatgcatcccctgtagaacaatttcatcagtcattgcaacaggggtgtgaagtgtcagtt
aaggagctagacaccctgctgacgctgcttgcggagaaaaagagaaaattggagcaagaa
gaagctgagagaaacatgcaaatcctgatgaacttcttgcattgcctaaggaaacagaag
gttgatgagttaaacgagatccaaactgatctccagtttatcaaagaggatataaatgcc
gtcgagaggcacagaattgatttgtatcgagcaagggacaggtattcagtgaagctgcgg
atgcttgctgatgatcccacagcaacaaaatcttggccttcatcgatttttaagaataac
aataataataatagtggccttagttccagttcacgtaatgcacaaggggggatgggtttt
ggaaattttcagtcgaagaaagcagatggtaagactcaattaagcactcttgctccccag
agaaaggataccataagtggactgggttcagaaaatatgagtcaatccggtcttgctgta
gtgaggaagaagcgtgtgcatgcacagttcaacgacctacaggagtgttacttacaaaag
cgacgacagttggctgaccagccaaataagcaggaagaaagggaagccaatgtgatacat
agggaaggttatactgcaggtcttactgaatttcaatctgtgctgagtaccttcacacgg
tacagtcgactaagggttattgccgaacttaggcatggggatctttttcattcagccaat
attgtgtcaagcatagaatttgaccgtgatgatgagctgtttgctactgctggagtttca
agacgtataaaagtttttgacttctcttcggttgtaaatgaacctgcagatgtacactgc
cctgttgtggagatgtcaacacgctcaaaacttagttgcttgagttggaacaagtttacc
aagaaccatatcgctagtagtgattatgagggaatagtaactgtttgggatgtcaccacc
agacagagtgtaatggaatatgaagagcatgacaaacgggcatggagtgttgatttttca
cgcaccgaaccctcaatgcttgtgtctggcagtgatgattgcaaggtcaaaatatggtgc
acaaagcaggaagctagtgttattaacattgacatgaaagcaaatatttgttgtgtcaag
tataatcctggatctagctttaatgttgcggttggctcagcagaccaccatatccactat
tatgatttgagaaatactagccatccacttcatgtgttcagtggacacaggaaagctgtt
tcatatgtgaaatttttgtccaatgatgagcttgcttctgcgtctactgacagcacatta
agattgtgggacgtgaaagagaatttgccgattcgcacctttaggggtcacacaaatgag
aagaattttgtgggtcttacagtaaacagtggatacattgcttgcggcagtgaatcaaac
gaagtatatgtttatcataaggcaatctcaaggcccgtgacttggcataagtttggttca
cccgatttggatgaaaccgatgaagatgctggatcttacttcattagtgcagtttgttgg
aaaagcgacagccctacaatgttggctgctaacagtcaaggaacgattaaagtgctggta
cttgcatcttga

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