Rhododendron vialii: 131324665
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Entry
131324665 CDS
T09330
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131324665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131324665
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131324665
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131324665
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131324665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
131324665
NCBI-ProteinID:
XP_058212715
LinkDB
All DBs
Position
4a:complement(28954367..28964281)
Genome browser
AA seq
1037 aa
AA seq
DB search
MEMESSRRTLDRSREPGLKKPRLAEDSVTLARYRERDAESSDSVRGGPPYQQQQELVSQY
KAALSELTFNSKPIITNLTIIAGENLHAAKAIAAAVCANIIEVPSEQKLPSLYLLDSIVK
NIGRDYIKYFAARLPEVFCKAYRQVDSSIHPGMRHLFGTWKGVFPPQSLQLIEKELSFPP
AVNGLPSGSTASRPDSQSPRPPNSIHVNPKYLEARQQRLQQSNKVKGAANDSTGTMVNLQ
EDTERVDRATGIVSGRPRADPPLKMQNVQRPQRDSVSFRDYEHGSDLSRQTGLGIGRASE
RDVDRAFDKPWNGGGSGMAETMATLKNGFDIKQGFPSYLNPRSTNTDVRLLPAQSISGKS
SSSGVSRSWKNSDEEEFMWDGMNSRSGDHAAISSSRKDYWIPDDSERLGNENSFRKLRNS
TDFGSRTDTEASTDSPSTNQKHQAALGHRMSSSWTQEPYSTDRISNSGSFQPQVGSSNIG
SSSFRFLKNPVSGSTGSGQPYSVGAESPGQSPMYQYPLSPSLPHRSHQVLHNLADQDQLP
AQLLPRPDLIKSQLSGPLNMGPHNQFSKEPFLAHPQKVPMGKPQILQPHNLQTSSPIVPA
IQPRQNTPFSQLLSPDPILSEPSGQPHKLQSPQTVISGNPSTSGNSSLDNANFPAAESTC
NLLASIVKSGILTTNSVSDSLPKLGFQDSGAVSSHPFVKPPLPSNPPSTQFTFSGPTVAS
GSLLTLPSHDNTSTSMTSSQRKLKQPPLPSGPPPSSVMGNSALAQASMENDVSNPVSSLI
NSLVAKGLISSSKMKPSSSVSEQMPTQLHNHSASIVSTSSVPVTSTITVSSKMEELSKLA
ATSSVALSQSAPVDIKPLIGFEFKPDVIRQSHQSVITELVDDLPHRCSTCGIGLKHQEQL
QRHLEWHDLKKPDVNCSNKASRRGWYADSADWVTGKVGLASGLQPTSVLELPGEGVEMNL
EMVVADETQCVCVLCGELFEDYYSHESDEWMFKGAVYMTIPLGEVGSSREIATQGPIVHA
NCISESSAQDLGLSSRA
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagcagtcgtagaacgctggacagatcgagagaaccaggtctgaagaaa
cccagattggccgaagactcggtaacgctggcaaggtacagagagagagatgcggagagc
agcgattcggtgcgaggaggtcccccatatcagcagcagcaggagctagtgagtcagtac
aaggctgctctgtcggagctgacattcaattcgaaacccatcatcactaacttgactatc
atagcgggcgaaaacttgcacgccgccaaggccatcgcggcagctgtctgcgctaatatc
attgaggttccaagtgagcagaagcttccttcgctttatcttttagacagtattgtgaag
aatattgggagggattatataaaatactttgctgccagattaccggaggtgttctgcaag
gcatacagacaggtagactcttctatacatcccggaatgcggcatctttttggaacatgg
aaaggagtattccctccccagtcacttcagctgattgaaaaagaactcagtttcccccct
gctgtcaatggtttaccttcaggatctacagcatccaggccagattcacaatctccacgt
ccaccaaacagtattcatgtgaatcccaagtatttggaggctagacaacaacgtcttcaa
cagtccaacaaagtaaaaggtgccgcgaatgacagtactggaaccatggtgaacttacaa
gaggatacagagagagtggacagggcaactggtattgtttccgggaggccacgggcagat
ccccctcttaagatgcaaaatgttcagcgtcctcagagagattctgtatcattcagagat
tatgaacatggttctgatctttcaaggcagacaggcttgggaattggaagagctagtgag
agggatgtggatcgagcgtttgacaaaccttggaatggaggtggcagtggtatggcagaa
acaatggccaccctaaagaatggttttgatatcaagcaagggtttccaagttacttaaac
cccagatcgacgaacactgacgtgcgtctactgcctgcacagagcatttcaggtaaaagc
agtagcagtggcgtgagcaggagctggaagaactctgatgaagaggagtttatgtgggat
ggcatgaactctagatccggtgatcatgctgcaatcagtagctcaaggaaagattactgg
atccctgatgattctgaaagattgggcaatgaaaactcctttcgtaagctacgaaattca
actgactttggttcaaggactgatacagaagcttcaactgattcaccgtccacaaatcag
aaacatcaagcagctttaggtcatcgcatgtcatcatcgtggacacaggagccatattca
acagataggatcagcaattcaggctcattccagccacaggtggggtcatccaatattggt
tcctcaagttttcggtttttgaagaatccggtgtcaggttccactggatcaggccaacca
tactctgtaggagctgagtcacctggacagtcacctatgtaccagtatcctctctcacct
tctctgccacaccgatcccatcaagtattgcacaatttggcggaccaagaccaactgcca
gctcaactccttcctcgtccagacttgataaaatctcaactttcaggacccttaaacatg
gggccacataatcagttctctaaggaaccttttcttgcgcatccccagaaagttccgatg
ggaaaaccacaaatattgcaaccccataatttacagacgtcatctcctattgtgcctgct
attcaaccaagacagaatactcctttttcacaactactatcgccagaccccattctgtct
gaaccttctggccaaccccataaattgcaatcgcctcagactgtaatttctggaaatccc
tcaacttctgggaattcttccttggataatgcaaattttcctgcagcagaaagcacttgt
aatttgttggcttcgattgtgaaaagtggaatactcactaccaattctgtttctgatagt
cttcctaaactgggtttccaggattctggggcagtatcatctcacccatttgtaaagccg
cctctgccaagtaaccctccatcaactcaatttacattctcgggccccacggtagcatca
ggatctttactaactctaccttcccatgacaacacttcaacttccatgacttcctctcag
agaaagctcaaacagccaccactaccatctggtcctcccccttcttcagttatgggtaat
agtgcattagcacaagcttcaatggaaaatgatgtttctaatccagtgtcaagtcttatt
aattcattggttgcaaagggattgatatcttcatcaaagatgaagccatcatcatctgtg
tcagagcaaatgcctactcaactccacaaccatagtgcaagcattgtctcaactagttca
gtcccagttacctctactatcacagtttcatccaaaatggaggagctttccaaacttgcg
gctacgagttctgtggccttatctcaatccgcccctgtagatatcaaacctctcattggg
tttgagtttaagccagatgtaattcggcagtcacatcaatctgttatcactgaactcgtt
gatgaccttccccatcgatgcagcacttgtggcattggacttaaacatcaagaacagctt
cagagacatttggagtggcatgatttgaaaaaaccagatgtgaactgttcaaataaggct
tcaaggagaggttggtatgcagattctgcggattgggtcactggaaaagtaggactggct
tccggactgcaacccaccagtgttttggaattgcctggtgagggagttgagatgaacttg
gagatggttgttgcagatgaaactcaatgtgtctgtgttttgtgtggtgagctatttgaa
gattactacagtcacgaatcagacgagtggatgttcaaaggtgctgtttacatgaccatc
cctttgggagaggttggaagttcaagggagattgccactcaaggtcccattgtccatgca
aactgtatatcagagagttccgcccaggatttgggattgtctagcagggcttaa
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