Rhododendron vialii: 131324708
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Entry
131324708 CDS
T09330
Name
(RefSeq) probable pectate lyase 12 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rvl
Rhododendron vialii
Pathway
rvl00040
Pentose and glucuronate interconversions
rvl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
131324708
Enzymes [BR:
rvl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
131324708
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
131324708
NCBI-ProteinID:
XP_058212769
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Position
4a:29907568..29915405
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AA seq
486 aa
AA seq
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MLHKTCIFLICVLSSFSPFSTAMLNLTLPGQHPDPDAVVQEVHRRVNVSLSRRQMLSTTT
NYQSSTCLTGNPIDDCWRCDPNWQLNRQRLADCGIGFGQHALGGKGGRYYVVTDSSDHDA
VTPRPGTLRYAVIQTEPLWIVFASNMLIHLSQELIFNSYKTLDGRGVNVHITGGGCITLQ
YITNVIIHNIHVHHCYQSGETNIRSSPTHFGWRTLSDGDGISIFGSRDLWIDHCSLSHCK
DGLIDAVMGSTAITISNNWFSHHNEVMLLGHSDAYLPDSGMQVTIAFNHFGQKLVQRMPR
CRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYIAPFNYNAKEVTKRVETGEEEWRG
WNWRSEGDIMVNGAYFVASGEGVEVKYEKAYSVEPKSASFIDQITLNAGVLGGRSNKLSK
WTSGNNGVGSGGGGTILESESDEDNSDAMFGSNAPPQPSSDAILYSVLISLSSFLFLYFT
TLYASL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctccacaaaacctgcattttcttgatctgtgttctgagctcattttctccattttcc
acggcaatgctcaacctcactttgcctggtcagcaccctgaccctgatgctgttgtccaa
gaagttcacagaagagtgaatgtttcactatcaagaaggcaaatgctatccaccacaacc
aactaccagtcaagcacatgcctaaccggaaacccaattgacgactgctggcgttgcgac
ccaaactggcagctcaaccgccagcgccttgccgactgcggtattgggtttggccagcac
gcactcggcggtaaggggggccgctactacgttgtcactgactcctccgaccacgacgcc
gtcacgccccgccccggtaccctccgctacgccgtcatccagacggagcccctctggatc
gtctttgcctccaacatgctcatccacctctctcaagagctcattttcaacagctataag
accctagatggtcgtggcgttaacgtgcacataaccgggggcgggtgcattacgctccag
tacatcaccaatgtcatcattcataacatccatgtccatcattgctaccaatcaggcgag
accaatatccggtctagcccgacccattttgggtggcgtaccttatctgatggagacgga
atatcgatattcggatccagggacttatggatagaccactgctcgctctcccactgcaag
gacggcctgatcgacgctgtaatgggttccactgcaatcaccatctccaacaactggttc
tcgcaccacaacgaggtgatgctgttgggccacagcgacgcctacttgccagactctggc
atgcaggttaccatagccttcaaccacttcggccagaagctggtgcagcggatgcccagg
tgcagacgagggtacatacacgtggtcaacaacgattttacgcagtgggagatgtacgcc
attgggggaagtgggaatcccaccattaacagccaggggaaccgctacattgcacccttc
aattacaatgctaaagaggttacaaagagggtggaaacgggggaggaggaatggaggggc
tggaattggaggagcgagggggacataatggtaaatggagcatactttgtggcatcaggt
gaaggtgtagaggtcaagtacgagaaggcctacagtgttgagcccaaatctgcaagtttc
attgaccagattaccctcaatgccggtgtccttggtggcaggagcaacaagttaagcaag
tggacttccgggaacaatggtgttggtagtggtggtggcgggacgattttagagtcggag
agcgatgaagacaactccgatgctatgttcgggagcaacgcgccaccgcagccatcctct
gatgccattctctactctgttctaatttctttgtcatcctttctatttttgtatttcacc
acattatatgcctccttgtag
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