Rhododendron vialii: 131325053
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Entry
131325053 CDS
T09330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131325053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131325053
03012 Translation factors [BR:
rvl03012
]
131325053
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131325053
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131325053
Translation factors [BR:
rvl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131325053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
AAA_23
ABC_tran
T2SSE
PhoH
ATPase_2
NACHT
Motif
Other DBs
NCBI-GeneID:
131325053
NCBI-ProteinID:
XP_058213075
LinkDB
All DBs
Position
5a:36436608..36457669
Genome browser
AA seq
1160 aa
AA seq
DB search
MRSNPRLGFLLACGKKSLFHALLLNKKYGIARGNRDLLSTAIPSSNSFASLCRIFAGYSF
SGRRAFCGYTVEQFSDDEYECDYDNHKASSSVCNIDEWKWKLSLLLRSEKDQEIVSRDKR
DRRDYEQISNLAKRMGLYCEIYGKVMVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVE
GLLQEHLDRMQLSSEKVSGTSSDIKVTDRGEDVHSNEDPDSFLDGSVMEKVLQRRSLRIR
NMQRSWQESPEGRKILEFRRSLPAFKEKERLLEAIARNQVVVISGETGCGKTTQLPQFIL
ESEIESGRGAFCSIICTQPRRISAMAVSERVSTERGEPLGESVGYKVRLEGIKGRNTHLL
FCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRKDLRLILMSAT
LNAELFSNYFGGAPRIHIPGFTHPVRANFLEDILEITGYKLTSFNQIDDYGQEKLWKTQR
QLVPRKRKNQIATLVEDALNKSSFENYSSRARDSLSCWTPDCIGFNLIEAVLCHICRKER
PGAVLAFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRK
IVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV
QPGECYHLYPRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLA
VQNAVDFLKMIGALDENEHLTHLGGYLAMLPVDPKLGKMLIMGAIFHCFDPILTIVAGLS
VRDPFLLPQEKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDADREGSAYEYCWRNFLSA
QTLQAIHSLQKQFQYILRDAGLLDADAGTNNRLSHNQSLVRAIICSGLFPGIASVVHRET
SMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGG
NLSPGVQAGHLKMLQGYVDFFMDPSLAECYVKLKEELNKLLQKKLQDPSIDIHKEGKYLM
HSVQELVSGDQCEGRFVFGRESKKLRVSSDSERFAKDGSNPKSLLQTLMMRAGHSPPKYK
TKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTQTSDKNQDEDDNSPPD
VTDNMLKLLGKRRRSKRRSG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcgttccaatcccaggctagggtttctcttagcatgtggcaagaaatcattgtttcat
gctctgttgttgaataaaaaatatggcattgctaggggaaacagggacttgttgtcgact
gctattccaagctccaatagctttgcttctctctgcagaattttcgccggttattcattc
tcgggtcgccgagcattttgcggctacaccgttgaacagttctcagatgatgaatatgag
tgcgactacgacaatcataaggcatcttcttctgtgtgcaacattgatgagtggaaatgg
aaacttagcttgttattacgaagtgagaaggaccaggaaattgtgtcccgagacaaaagg
gataggagagactatgaacaaatatctaaccttgccaagaggatgggcctttactgtgaa
atttatggaaaggtgatggttgcgagcaaagttcctcttcccaactataggccagatctt
gacgataagcggcctcaaagagaggtggttatcccgctaagcttgcaaaggagagtggag
ggtctgctgcaggaacaccttgatagaatgcagttgagttctgaaaaggtcagtggcact
tcaagtgacattaaggtcactgatcggggtgaagacgtacattcaaatgaagaccctgat
tctttcctagatggttctgttatggaaaaagttctacaaagaagaagtttgcgaattcgt
aatatgcagagatcatggcaggaatcaccagaaggcaggaaaatccttgaattccggaga
tctctgcctgcattcaaggagaaggaaaggctgctcgaagcaattgcgaggaatcaggtg
gttgtaatttctggggagactggatgcggtaaaactacccaacttcctcagtttatattg
gagtcagaaatagaatctggtcgtggagcattctgtagcataatatgcacacaacctcga
agaatttctgccatggctgtttcagaaagagtgtctactgagcgaggagagcctcttggt
gaatcagttggctataaagttcgattggagggaatcaaaggaagaaatactcatctgctt
ttttgtacaagtggtattttgcttcgacgtctgttgagtgaccggaacctgaatggtata
acgcatgtatttgttgatgaaattcatgagcgtggcatgaatgaagatttcttattgatc
gtgttgaaggatcttcttccacgaaggaaagacctgagattaatattaatgagtgctact
ttgaatgctgagctattttcgaattattttggaggggcaccaagaatccacatcccgggc
tttacacatcctgtgagagcaaactttctggaagatatattggaaattactggatataag
ttgacttctttcaaccaaattgatgattatggccaagagaagttgtggaaaacccaaaga
cagctggtgccaaggaaaaggaaaaatcagattgctactcttgttgaggacgctcttaac
aaatccagctttgagaattatagctccagagctcgtgattcactgtcatgttggactcct
gattgcattggtttcaatcttattgaggctgttttatgccatatatgtcggaaggaacgg
cctggagctgtcttagcgttcatgactggctgggaggacattagctgtttgagggatcaa
cttaaagctcatcctcttttaggtgaccctaacagagttttgctgcttacttgccatggt
tcaatggcaacatctgaacagaaactcatatttgagaagccgcctcctaatgttcgtaaa
atagtacttgctactaatatggcagaggcaagtattacaatcaatgatgtagtgtttgtt
gttgattgcggaaaagcaaaggagaccacttatgatgcgttaaataatactccctgtctc
ctaccttcatggatatcacaagcttctgctcggcaaagaaggggtagggctggccgtgtg
cagcctggcgagtgctaccatctatatccccgctgtgtttatgatgcttttgctgaatat
cagcttcctgaacttctgagaactcctttgaactctctctgcttgcaaataaaaagtttg
caggtggggagtattggagaatttttgtcagctgctctgcagccaccagaaccgttggct
gtccagaatgctgttgattttttgaaaatgattggagcactagatgagaatgaacatctt
acgcatcttggtggatatcttgcaatgctgccagtggatcccaagcttgggaaaatgtta
ataatgggtgctatatttcattgctttgatcctattctgacaattgtggctggacttagt
gtgagggatccttttcttttgcctcaagaaaaaaaggatttagcaggcacagcaaaatcc
aggttttctgcaaaggactatagtgatcatatggcgcttgtccgtgcctatgaaggatgg
aaagatgcagacagagaaggatcagcttacgagtactgctggaggaatttcctttctgcc
caaacacttcaagcaatccattctcttcaaaagcaatttcaatacattttgagggatgct
ggattgctagatgctgatgctggcactaacaatagattgagtcataaccagtcattagtt
cgagcaattatatgttctggcctctttcctggaatcgcatctgtggtgcacagggagaca
tccatgtccttcaaaacgatggatgatggccaggttctactttatgctaattcggtgaac
gcacgttaccagacgattccatacccatggcttgtctttggtgaaaaagtaaaggtcaac
acggttttcatacgcgattcaactggcgtttctgattccattcttatccttttcggcggt
aatcttagcccaggagttcaggctggacatttgaaaatgctgcaaggctatgttgatttc
ttcatggatcccagtctggcagagtgttatgtgaagcttaaggaggagcttaataagctt
ctgcagaagaagctccaagatcctagcatcgacatccacaaggaaggcaagtacctcatg
cattcagttcaggagctagtatcaggagatcaatgcgagggtagattcgtatttggccgt
gaaagtaagaaacttagggtgtctagtgacagcgagagatttgcaaaagacggatcaaac
cctaagagcttgctacaaactctcatgatgcgggcgggacactcccctccaaagtacaaa
acgaagcatctaaagacgaatgaattcagggcactggtagagtttaaggggatgcaattc
gtggggaagcccaagaaaaacaaacaacttgcagagagggacgccgccatagaggcattg
gcctggttgactcaaacctctgacaaaaatcaagacgaagatgataattcccctcctgat
gtcacggacaacatgttgaaacttcttggtaagcgcagaagatcaaagcggcgctcaggt
tga
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