Rhododendron vialii: 131325171
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Entry
131325171 CDS
T09330
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131325171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131325171
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
131325171
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
131325171
NCBI-ProteinID:
XP_058213249
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Position
5a:complement(8296261..8304376)
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AA seq
931 aa
AA seq
DB search
MPEECCWMIMESTVEGWPNSYAFPLAAKFPPCSPTDLHQKGRKRMRSSSEENHHANLTSS
GYTSDEREQKKARTSLQIIDYSNPFAVRNLLEDLDCGKYGSVTKEINDLLARKRQMLNPY
FAMHPTLVDLEVNLVKEAAKVNQQPATPLACRDVIELDDDDTDDVSAERLAVVVHRSPVV
VLDSEDEDTEDRKPFNSYQQIILPKPPGEFLMKDFLMKDFLIQDRDCTPKRSSGKNNAKL
PEESETPKESETPKDKGVYVGVEDEMETDSEFDGLADIWKEMNFAMECSKDNVEDSPEEH
EGEDECDHSFVLKDDLGYVCRICGVIQRGIETIIEYQYAKSTRNIRTYSSEARNAKDKDP
TEIFDGAKSSGQDFIITDIAAHPRHMKQMKPHQVEGFNFLLSNLVSDNPGGCILAHAPGS
GKTFMIISFMQSFLAKYPQAKPLVVLPRGILATWKKEFRRWQVEDIPLYDFYTVKADSRT
QQLEVLKKWADHRSILFLGYKQFSSIVCDNETNKAAVACQEILLTYPSILILDEGHTPRN
EETDVLNSLKKVQTPRKVVLSGTLYQNHVKEVFNIFDLVRPKFLKMDTSRAIIRRILSRV
PFMRKHVRAKGLDNVFYESVELTLQKDENFKRKVTVIQDLREMTGKVLHFYKGDFLDELP
GLVDFTVFLNLSSTQKREVEQLKLLNRKFKISSDGSALYVHPQLRYNLKNNGSRERDGID
DAKMDKILENLDVKEGVKAKFFLNLLALCESGGEKLLVFSPYLQPLKFLERLAVKVKGWS
PGKEIFVITGDSTSENREWSMDHFNTSPDARVFFGSIKACGEGISLVGASRIIILDVHLN
PSVTRQAIGRAFRPGQVRKVYTYRLVAAESPEEEDHATCFRKESIAKMWFEWNEYCGQNE
FEMETVDVRDCGDDFLGSSKLSEDVKALFKR
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgccagaagaatgttgttggatgatcatggagtcgacagtggaaggttggccaaacagt
tatgctttcccgcttgcagccaagtttccaccttgtagccctactgatttgcatcagaag
ggacgcaagaggatgagatcatctagcgaagaaaatcatcatgccaatttgacttcatct
ggatatacgagtgatgaacgtgagcagaagaaagcaagaacttctctgcaaattattgac
tattccaatccattcgcagtgcggaacttgttggaggatcttgactgtggcaaatacggg
agcgtaacaaaagaaataaatgatcttcttgctcggaagaggcagatgctgaatccttat
tttgcaatgcatcctacacttgtagatttggaagtgaacctggtgaaagaggctgcaaag
gtgaaccagcagccggctactcctttggcttgccgggatgtgattgaattggatgatgat
gataccgatgatgtttcagcagaaagattggcagttgtagttcatagatcgccggttgta
gttcttgattcagaggatgaagatacagaagatcgcaaaccctttaattcatatcagcag
attatcttgcccaagccacctggagagtttctcatgaaggattttctaatgaaggatttc
ctgatacaggatagagattgtactcctaaacgaagttcgggaaaaaataatgcaaagctt
ccagaagaaagtgaaaccccaaaagaaagtgaaaccccaaaagataaaggagtttacgtt
ggcgttgaagatgagatggaaactgattctgaatttgatggtctggctgatatttggaag
gagatgaattttgcaatggaatgttccaaggataatgttgaagattcgcctgaggaacat
gaaggagaagatgaatgtgaccatagttttgtcttgaaagacgatctaggttatgtttgt
cggatttgtggagttatccaaagaggaatcgaaaccattatcgagtaccagtatgctaag
agcacaaggaacatacgaacatacagttctgaagcccgtaatgcaaaggacaaggacccc
actgaaatctttgacggtgctaaatcatctggacaggatttcataatcactgacatcgcg
gctcatcccaggcacatgaagcaaatgaagccccatcaagttgagggctttaattttctt
ctaagcaatttggtgtcagacaatccaggtggctgcatccttgcccatgccccagggtcg
ggcaaaactttcatgataatcagtttcatgcagagttttcttgccaagtatccccaggct
aaaccactggtggtactgccaagaggtatccttgctacttggaaaaaggaatttcgaaga
tggcaagtggaggacattccgctgtatgacttttacactgtaaaagcagatagtcgaacc
caacagcttgaagtgctaaaaaagtgggcggaccacagaagcattctatttttggggtat
aagcagttttcgtccatagtatgtgataatgaaacgaacaaggctgcagttgcttgccaa
gagatacttctgacatacccatccattctcattttggatgaaggccacactcccagaaat
gaggagaccgatgtcctcaactccctcaagaaagtccagacacctaggaaagttgtactt
tctggaaccctttaccagaatcatgtgaaagaagtgttcaatatttttgatcttgttcgt
ccgaaattccttaagatggatacttcacgcgccattatcaggcggatattgagcagagtg
ccttttatgaggaaacatgtgagggcaaagggtttagacaacgttttttacgaatcagtt
gagctcactctacagaaagatgagaacttcaagagaaaggtgactgtgatccaggattta
cgcgaaatgactggaaaagtcctccatttttacaaaggggattttctggatgaactgccg
ggactcgttgatttcacagtgtttctcaatctcagctctacacagaagcgtgaagttgaa
cagttgaagctgttaaacaggaagttcaaaattagttccgatgggagtgcgctttatgtg
cacccgcagttgagatataacttgaagaataatgggtctagagaaagagacggaatcgac
gatgcaaaaatggataaaattttggaaaatttggatgttaaagaaggagtgaaggcaaaa
ttctttctaaatttgttagcgttgtgtgaatcaggtggtgagaagctactagttttcagc
ccgtatttacagccactaaagttcttggaaaggctagcagtgaaagtcaagggatggagt
cctggaaaagagattttcgtaatcaccggtgattccacttctgagaatagggaatggtcc
atggatcacttcaatacttcacctgatgctagggtcttttttgggtccataaaagcttgt
ggggagggaatatctcttgtgggtgcttctcggatcattatactggatgtccacttgaat
ccatcagttacccgccaagcaataggtcgtgcattccgacctggtcaagtgaggaaagtc
tatacatatagattggttgccgcagagtcacctgaagaggaagaccatgccacttgtttc
agaaaagagtccattgcgaagatgtggttcgaatggaatgagtattgtggtcaaaacgag
tttgaaatggagactgtggacgtgagagactgtggggatgatttcttggggtcgtcgaag
ttgagtgaagacgtgaaagctctgttcaaaaggtaa
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