Rhododendron vialii: 131325440
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Entry
131325440 CDS
T09330
Name
(RefSeq) protein STABILIZED1-like
KO
K12855
pre-mRNA-processing factor 6
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131325440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131325440
Spliceosome [BR:
rvl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131325440
Complex C
U5 SnRNP specific factors
131325440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
PRP1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_19
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_16
TPR_2
TPR_8
ARM_TT21_C
TPR_15
Motif
Other DBs
NCBI-GeneID:
131325440
NCBI-ProteinID:
XP_058213697
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All DBs
Position
5a:complement(4593915..4596851)
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AA seq
933 aa
AA seq
DB search
MQGPVQHRARLEFLNAIPPLPNYVAGLGRGATGFTTRSDIGPASAAPDRPAAATVGVGRG
RGRGRGTGGEEEEENEDVYDNESQRFDEFEGNDVGLLYAWAKYDKEDEEWDAVMVKIEEG
MDSRKEKREARLKREIEEYRASNPTITEQFADLKRELHTMSPSEWESIPESTHSSRNKKR
RRFESYVPVPDTLLEKARQEQAHVTAFDPKSWAAGGTETPGVNDLTVVGEGRGTVLSLKL
DRLSDSVSGLTVVDPKGYLTDLNSMKITSGAEISGTKKERMVLKSLIQAKPEEPLGWIAA
ARLEERAGKIQAARQLITKGCEECPENEDVWIEACRLSRPEEAKAVIASGVKAIPNSVEL
WMQAAKLELKDENKSRVLRRGLEHVPSSVRLWKAVVELAHEEDARLLLMRAVECCPLHVE
LWLALARLETYDVAKKVLNKARFSLPKEPATWITAAKLEEANGNNARVGKIIENGIRALR
KVGVVIDRDAWMKEAEAAERAGSVATCQAIVHNTIGVGVEDEDRKRTWVADAEECEKRGS
IETARAIYAHALTVFLTKKSIWLKAAQLEKTYGTRESLDAMLRKAVTYMPQAEVLWLMGA
KEKWLAGDVPSARAILQEANAAIPYSEEIWLAAFKLEFENHEPERARMLLAKARERGGTE
RVWMKSATVERESGNTDEERKLLDDGLKYFPSFFKLWLMLGQLEERLGYLERAKEVYESG
LKHCSSCVPLWLSLAKLEEKMHGLSKARAVLTMARKKNPQSPELWLAAVRAESRHGNGKE
ADILMAKAVQVCPNSGILWAASIEMVPRPQRKTKSMDAHKRCDHDPHVIAAIAKLFWHDR
KVDKARSWLNRAVTLGPDIGDFWALFYKFEIQYGTEETRTDILKRCIAADPKHGEKWQAL
SKALENSHQPTEAVLKKVVVALGKEETSAKGNN
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgcagggccccgttcaacacagggctaggctagaattcctcaacgcgattccccccctc
ccgaattacgtggccggtctgggccgcggcgccaccgggttcaccacccggtccgatatc
ggccctgccagtgctgctcctgaccggcctgctgctgccacagtcggggtgggccgcggg
agagggagagggagagggacgggcggggaggaggaagaggagaatgaggatgtgtatgat
aatgagagtcaaaggtttgatgagtttgaaggcaatgatgtgggtttgttgtatgcctgg
gcgaagtacgataaggaggatgaggaatgggacgcggtgatggtgaagattgaggaggga
atggatagccggaaggagaaaagggaggctaggttgaaacgggagattgaagaatacagg
gcgtctaaccctacgattaccgagcagttcgctgatctgaaaagggagttgcacacgatg
tcgccttccgagtgggaaagcatccctgagagtactcattcgtcgaggaacaagaagagg
aggaggtttgagagttacgtgcctgttccagacaccctccttgagaaggctaggcaagaa
caagcacatgtcacggcatttgatccgaagagttgggcagccggagggacagagacccct
ggggttaatgacttgaccgtggtgggtgaagggagagggaccgtcctgtcgctcaaactg
gataggctttcggattcggtatcagggttgacagttgttgatcccaagggatacttgact
gatctcaacagtatgaagatcaccagtggtgccgaaatatcgggtaccaagaaggagagg
atggtgctcaagtcgcttatccaagcaaagcctgaagaaccgctcggttggattgctgcc
gctaggttggaggaacgcgctggtaagattcaggctgcaaggcagttgataaccaaaggt
tgcgaggagtgtccggagaatgaagatgtttggatagaggcatgtcggttgtctagacct
gaggaagcgaaggctgtgatagcaagtggagtgaaggcaatcccaaactctgtggagttg
tggatgcaggccgcaaagttagagctcaaggatgagaataagagtagggtgttgcggagg
ggactggagcatgttcctagttctgtccggctgtggaaggctgttgtggagcttgcccac
gaggaggacgcaaggcttttgctgatgagggctgtggaatgctgccctttgcatgtggag
ttgtggcttgctcttgctaggttggaaacttatgacgttgcgaaaaaggttttgaataag
gcgaggtttagtctccccaaagagccagctacttggattactgctgcgaaattggaagaa
gcaaatgggaataatgctagggtgggaaagataatagaaaacggtattcgagctttgcga
aaggtaggtgtggtgattgacagagatgcttggatgaaagaggcggaggccgctgaacga
gctggatctgttgccacttgccaggctattgttcataacaccattggggttggagtagag
gatgaagaccggaaaaggacatgggttgccgacgcagaggagtgcgagaaaaggggttcc
attgaaactgccagagccatatatgctcatgcccttacagtatttttgaccaagaagagt
atttggctcaaagcagcacagcttgaaaagacttatgggaccagggaatctcttgatgcg
atgcttcgtaaagcagtgacttacatgccacaggctgaagttctatggttaatgggtgct
aaagagaagtggcttgctggtgatgtaccttcagctagagcgattcttcaagaagccaat
gctgcgattccctactctgaggagatttggcttgctgcattcaagcttgaatttgagaac
catgagcctgagagagcaagaatgcttctagctaaagcacgagaaagaggaggcacagaa
agagtgtggatgaagtctgctactgttgagagagaatccggaaacactgatgaggagagg
aagttacttgacgatgggctgaaatacttcccttcatttttcaaactgtggttgatgctt
ggacagctggaggaacgccttggttacttggaaagagctaaggaagtgtatgagtcgggt
ttgaagcattgttccagctgtgttcccctttggctttcgctcgctaagctggaggagaag
atgcatgggttgagtaaagctagagcagttctcacgatggcaaggaagaagaatcctcag
agccctgaactttggcttgctgctgttagagctgaatcaaggcatgggaatgggaaggaa
gcagatattctgatggctaaggcggtgcaggtgtgccccaatagtggtatactgtgggca
gcttcgattgagatggtcccgcgtccgcaacggaagacaaagagcatggatgcgcacaag
agatgcgaccacgatccacatgtcattgctgccattgctaagctattttggcatgacagg
aaggtagacaaagcaaggagttggcttaacagggcagtgactcttggaccggatattggg
gatttctgggcattgttctacaagttcgaaattcagtatggaaccgaggagactcggaca
gatattttgaagagatgcatcgctgcagatccaaagcatggggagaaatggcaagcactg
tccaaggctctggaaaattcccaccagccaactgaagctgttttgaagaaagtagtggtc
gcacttggaaaggaagagacttctgccaagggtaataattaa
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