Rhododendron vialii: 131325655
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Entry
131325655 CDS
T09330
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131325655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131325655
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131325655
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131325655
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
ScoMcrA_N
DUF4857
Motif
Other DBs
NCBI-GeneID:
131325655
NCBI-ProteinID:
XP_058214033
LinkDB
All DBs
Position
1a:complement(38913109..38914316)
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AA seq
284 aa
AA seq
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MSVGDFDPNPKPKPVVIREVWSTNLESEFDLIRNLIDRYPYISMDTEFPGVVFRPTATAL
NHHQQRRRLEPSDHYKLLKSNVDALNLIQVGLTLSDSSGNLPDLDGTTAFIWEFNFRDFD
VARDPYAVDSIDLLRRQGIDFDKNRSNGVDSARFAELMMSSGLVCNDSVSWVTFHSAYDF
GYLVKILTRRELPGGLEEFLGILRVFFGNNVYDVKHLMRFCQSLFGGLDRVARTLEVSRA
VGKCHQAGSDSLLTWHAFQKMRDLYFVENGPEKHAGVLYGLEVF
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcggcgactttgacccgaaccccaaacccaaacccgtcgtgatccgagaggtc
tggtccaccaacctcgagtccgaattcgacctcatccgcaacctcatcgaccgctaccct
tacatctccatggacaccgagttccccggcgtcgtcttccgtcccaccgcaaccgccctc
aaccaccaccagcagcgccgccgcctggaaccttccgaccactacaagctcctgaaatcc
aacgtcgacgccttgaacctcatccaggtgggcctcaccctctccgactcctccggaaac
ctccccgacctcgacggcaccaccgccttcatctgggaatttaacttcagagactttgac
gtcgcgcgtgacccctacgcggtcgattccattgacttattgcgtcgtcaggggatcgat
ttcgacaagaaccgatccaacggggttgactcggccaggttcgccgagttgatgatgtcg
tcggggctggtctgcaacgactcggtgagctgggtgacgtttcacagcgcgtacgacttc
ggttacctcgtgaagatcctcacgcgccgcgagttgccgggcgggctggaggagtttttg
gggatcctgagggtgtttttcggaaacaacgtttacgacgtgaagcacttgatgcggttc
tgccagagcttgttcggggggttggaccgggtggcgaggacgctggaggtgagccgggcg
gtcgggaagtgccaccaggccggttcggacagcctgctgacgtggcatgcgttccagaag
atgagggatttgtactttgtggagaatgggccggagaaacacgccggcgttttgtacgga
ttggaggttttctga
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