KEGG   Rhododendron vialii: 131326500
Entry
131326500         CDS       T09330                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
rvl  Rhododendron vialii
Pathway
rvl03030  DNA replication
rvl03410  Base excision repair
rvl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131326500
   03410 Base excision repair
    131326500
   03420 Nucleotide excision repair
    131326500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rvl03032]
    131326500
   03400 DNA repair and recombination proteins [BR:rvl03400]
    131326500
Enzymes [BR:rvl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     131326500
DNA replication proteins [BR:rvl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    131326500
DNA repair and recombination proteins [BR:rvl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      131326500
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 131326500
NCBI-ProteinID: XP_058215282
LinkDB
Position
5a:complement(3892361..3923049)
AA seq 2229 aa
MNGEGRRRGGDRRDLRLSKQQKLILTAEEQLESKLGFDLFSEGDKRLGWLLTFSSSSWED
QDTHKVYSCVDLYFVCQDGSTFKTKYKFRPYFYAATKDKMEMDVEAYLRRRYESQIADIE
IVEKEDLNLKNHLSGLRKPYLKISFDTVQHLMRVKSDLMHVVERNQAKLDAAEAYESVLT
GKSKQRPQDFIDCVFDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSAGVMLERRTDLLQR
AEVHVCAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGEDIEDLEYTPKP
EFEGFFKVTNVKNEEELLRHWFAHMREVKPGIYVTYNGDFFDWPFLESRAAHHGSRMSDE
LGFKCDQNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMV
RFAKERPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLL
MVQAYEANVICPNKHESDPEKFYSNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSA
YEQLINNLDRDLQYAIRVEGKMDLDLVSNYDEVKNAIMEKLMNLRDEPIREEFPLIYHLD
VAAMYPNIILTNRLQPPSIVSDEICTACDFNRPGKTCLRKLEWVWRGETYTAKKSDYFHM
KRQIESEFVDSGDGQISKSFLDLPKLEQQSKLKERLKKYCQKAYKRVLDKPVTELREAGI
CMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKSSGNSIKIQEAQDMVVLYDSLQL
AHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWC
ALPGSFPENFTFKTKDSKKKLTISYPCVMLNVDVARNNTNDQYQTLKDAVNKSYTTHSEC
SIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQA
ELFDKFLNGSTLEECYSAVASVANRWLDLLDNQGKDVADSELLDYISESSTMSKSLADYG
QQKSCAVTTAKRLADFLGDAMVKDKGLRCQYVVACEPKGTPVSERAVPVAIFETDPEIVK
FYVRKWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVANPVPRVVHPDWLHK
RVREKEDKFCQRKLVDIFSSLKTDGDINMSIGPTTTNQITDEKNLADLEDFKHGGGTSVT
RHRPIVRYEVNNRLHLVKASCQVDPPQKQSDGGGSVRQPLSPLHHNIINVEDIDRNVDYQ
GWLEVRKRRWKDTLEKRKRQRLGDLKALNQTNGAFGMPGKTNPKQTQRKTGVNSYFERQE
LALIRSHWQIVQIVPSSQHGQYFAWVVVEGVMRKIPIVVPRVFYLNSKAPITEEFPGRRV
NKILPHGRHSYNLIEVNIDEDQFRAESKKLAAHLADPEVEGIYETNMPLDFNAILQIGCV
CKVDKAAKKRNPQDGWMLDELHMKTTTECSYLEQTFSFFYLYHSISEGRAIYVGFFPASR
TISVVVVNPFQNKELSPHIIEKQYREASQALSIEPPMPRDSTNFKVDYVGNVKDAEKIIQ
RIINEYRQLHHVPAIAVIECPEVHLMKSYIRALDDFPCVSIPCNARDSNYQALGWQTMAS
KIGMQRCAASSQWLNERISLSRYAHVPLGNFELDWLMHTADIFFSRALRDQQQVLWISNT
GNPDLGGINEEESCFADEVNQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQLNEMEGGV
LFGLEQDLNSGAHTLNEHCCFDEVTSCSPAFRVLKQLIQRCLTDALTSGNVFADAILQHL
YRWLCSPHSKLHDPALHRMLHKVMQKVFALLLAEFRKLGAAIVFANFSKVIIDTGKSDLY
AAKAYCDNLLKTLQTRDLFEWIELEPVQFWHSLLFMDQFNYGGIQARLNGQSLEGLSESE
SGSELDESQVDIVSSWNIAENLPKTTQDHFILIVSEFIYIPWKYAREQTAIRASMRDGNL
CTPSISGAAAESFESHMTEYLREQISSYFADKLLRIVRDAIHQTKGMNNPSADQHMSYGH
PLVSNIQMGDPALEFIKHVCAVLALDQNVQHDILIMRRNLLKYVRVREFAPEAEFRDQCL
SFTLPNVICSYCNDCRDLDLYHDKAFLAQEWRCGVPQCGQPYDREAMENILLQIVRQRER
LYQLQDLVCLKCNQVKAAHLSVVCACAGSFRCKDDVSEFHNKMQVFLNIAIHQKFQLLQE
CTSWILEMK
NT seq 6690 nt   +upstreamnt  +downstreamnt
atgaacggcgaaggtcgaaggagaggaggagacagacgagatctaagactctcgaagcag
cagaagctcatcctcaccgccgaagagcaactcgagtccaagctcggttttgatctcttc
tccgaaggtgacaagcgcctcggctggcttctcaccttctcatcctcatcttgggaggat
caagatacccacaaggtctacagttgtgttgatctctactttgtttgtcaggacggctct
acttttaagacgaagtacaagttccggccatatttttatgcggctacaaaggataaaatg
gaaatggatgttgaggcctacttgagaagacggtatgagagtcagattgctgatatagaa
attgtagagaaagaagaccttaatcttaaaaaccatctatccggtctacgtaaaccttat
ctcaagatatcctttgatactgttcaacacctgatgcgtgtaaaaagtgatcttatgcat
gttgttgagagaaaccaggcaaaacttgatgctgctgaagcttacgagtctgtattaaca
ggaaaaagcaaacaacgaccgcaagatttcatagattgtgtatttgatcttcgggagtat
gatgttccttaccatgttcgttttgctattgacaatgatgtgagatgtgggcagtggtat
gatgttagtgtatccagtgctggggttatgttggaaaggagaaccgatctcctgcaacgt
gctgaagttcatgtttgtgcatttgatattgagaccaccaagcttcctttaaagtttcca
gatgctgactatgatttaataatgatgatctcctacatggttgatgggcaagggtatcta
attattaacagagagtgtgtaggagaagatatagaggatttggaatacactccaaaacca
gaatttgaaggtttttttaaagttaccaatgtgaaaaatgaggaagagcttcttagacat
tggtttgcccacatgcgagaggtgaaacctgggatatatgttacttacaatggtgacttt
tttgattggccattcctagaaagcagagcagcccatcatgggagtagaatgagtgatgag
ttaggattcaaatgtgaccagaatcaaggggaatgtcgtgccaaatttgcttgccatctt
gattgctttgcatgggtcaaacgtgatagttatcttccccagggaagccaaggcttaaag
gctgttaccaaggccaaattgggttatgacccattggaggtgaatccagaggatatggtt
cgttttgcaaaggagaggccccagatgatggcctcctattctgtttcagatgccgttgca
acttattacttgtacatgacctatgtccatccattcattttctctcttgccacaataata
cccatgccaccagatgaggttttgcgtaaaggaagtggaaccctttgtgagatgcttctt
atggttcaggcatacgaggcaaacgttatttgtcctaataaacacgaatcggatccagag
aagttctatagtaatcatctcttggagagtgagacatatattggtggccatgtggaatgc
ctggaaagtggtgtttttagatctgatctaccaactagttttaagcttgatccatctgct
tatgagcaattgatcaataatcttgatcgggatctgcaatatgctattagagtggagggt
aagatggacttggatttggtttcaaattatgatgaagtgaagaatgccattatggaaaag
cttatgaatctgcgagatgaacctatacgtgaagaattcccacttatttatcatctagat
gtggctgcaatgtacccaaacattattttgacgaacaggctccagccaccatcaattgtc
tctgatgagatctgcaccgcatgtgatttcaaccggccgggcaaaacttgtcttcggaag
cttgaatgggtctggcgtggggagacgtacacggcaaagaaaagtgattactttcatatg
aagaggcaaattgagtctgagtttgttgatagtggagatggccaaatatcaaaatccttt
ctggatctacctaaattggagcagcaatcaaaactcaaagagcgtctaaagaaatactgt
cagaaggcttataaacgggtacttgacaagccggtaaccgagctacgagaagcagggatc
tgcatgcgtgaaaaccctttttatgttgacactgtccgcagcttccgagatagaaggtat
gaatacaaaggactcaataaggtttggaagggaaagctgtcagaagcaaagtcaagtgga
aattctataaagattcaagaagcacaagatatggtagtactttatgattctctacaactg
gctcataaatgcattctcaattccttctacggatacgtcatgcgcaagggtgcaagatgg
tactctatggaaatggctggagttgttacatatactggtgcaaagataatccaaaatgca
cgtttactcgttgagaaaattggacgaccactggaattagacactgatggtatctggtgt
gctttacctggatccttccctgagaacttcacttttaaaacaaaagactcaaagaagaag
ctgacaatttcatatccttgtgttatgcttaacgttgatgttgcaaggaacaacacaaat
gatcagtaccagacactcaaagatgcggttaataaatcatacacaactcacagtgaatgc
tcaattgaatttgaagtagatggaccctataaggcaatgattcttccagcttctaaggaa
gaaggaattttaattaagaagcgctatgctgtttttaatgatgatgggactctggcagag
cttaaaggtttcgagatcaagcgtagaggtgagctgaagctcatcaaagttttccaggct
gagctttttgacaaattccttaacggatcaaccttagaggaatgctactctgctgttgca
tcagttgccaaccgttggctcgatcttctcgataatcaagggaaggatgttgcggacagc
gagttacttgattatatatcagaatcaagcacgatgagcaagtccctagcagactatggc
caacaaaagtcatgtgcagtaaccactgcaaaacgtcttgctgattttcttggtgatgca
atggtcaaagacaaaggactgcgttgtcaatatgtagttgcatgcgagccaaagggtaca
ccagtaagcgagcgtgctgtccctgttgcaatatttgaaactgatcctgaaatagtgaag
ttttatgtgcggaagtggtgcaaggtttcatcagatgttggtattcgctccattattgat
tggtcctattacaagcaacggcttagctcagcaattcagaaaattgttaccattcctgct
gcaatgcagaaggttgcaaatcctgtacctagggtagttcatccagattggttgcataag
agggttcgtgagaaggaggataaattttgccagcggaaattggttgatattttcagctca
ttgaagacggatggtgacattaacatgagtattggtcctacgaccaccaatcaaataaca
gatgaaaagaatcttgctgatctggaggactttaagcacggaggtggaacttctgttacc
agacataggcctattgttcgttatgaagtcaataacagattgcatctggttaaggcaagc
tgtcaagtagatcctccacagaaacaaagcgatggtggtggaagtgtgcgtcaaccattg
tcaccgctgcaccacaatatcataaatgttgaagatattgacagaaatgtggattatcaa
ggatggcttgaggtaaggaagagaaggtggaaagatactctcgagaaaaggaagcggcaa
aggttgggagatttgaaggcactaaaccaaactaatggtgcttttgggatgcctggaaag
acaaatccgaaacaaactcagagaaaaactggggtaaattcctattttgagaggcaggaa
ttagcccttatacgctctcactggcagatagttcaaattgtaccgagttcgcaacatgga
caatactttgcctgggttgtagtagaaggcgtcatgcgtaagattcctatagttgtaccc
cgagttttttacctcaactctaaagctcctataacagaagaatttcctggaaggcgtgtc
aacaagattcttcctcatggacgccatagctataacctaattgaggtcaacattgatgaa
gatcaatttagggctgaaagcaagaaacttgctgctcatcttgcagatccagaagttgag
ggaatatatgagacaaacatgccattggattttaacgccatccttcagattggttgtgtt
tgtaaagttgacaaagcagctaagaaacgaaatccccaggatggctggatgctggatgaa
ttacacatgaagacaacaacagaatgctcttatctggaacaaacattctctttcttctac
ttgtatcacagcatctccgagggacgggctatatatgttggattttttcctgcatctagg
acaatatcagttgtggtggttaatcctttccagaataaggaactatcaccacatattatt
gagaaacaataccgtgaagctagtcaagcattgtcaattgaacctcccatgcctagagat
agtaccaattttaaggtggattatgttggaaatgtcaaggatgccgagaagattatacaa
aggataataaatgaatacaggcaactacatcatgtacctgcaattgctgtaattgagtgc
ccagaagtccatctgatgaagtcgtatatacgtgctctggatgatttcccatgtgttagc
atcccttgtaatgctcgtgatagtaactatcaggctcttgggtggcaaactatggcatca
aaaattggaatgcaacgatgtgctgcatcatctcagtggttgaatgagagaatttctctt
tcgcgatatgcccatgttccactagggaattttgaacttgattggctcatgcatacagca
gatatcttcttttcaagagctttacgtgatcagcaacaggtactttggatatctaatact
ggcaatccagatcttggaggcattaatgaagaagagtcgtgctttgctgatgaggtcaat
caacctgttcttacttaccctggagcgtacaggaaagttactgtagaactaaagattcat
cacctggctgttgatgctcttctgaaaagcaaccagttgaatgagatggaaggaggtgtc
ttgtttggattagagcaggatttgaattctggagcacatactttgaatgaacactgttgc
tttgatgaggttacctcatgttcacctgcgttccgtgttctcaaacaattgatccaaaga
tgcctcacagatgcacttacgtctggaaatgtgtttgctgatgcaatattgcagcattta
taccgatggctttgcagcccacactcaaaacttcatgacccagctcttcaccgtatgctt
cataaggtcatgcaaaaagtgtttgcgctgttgttggccgaatttcgtaagttgggtgct
gcaattgtgtttgccaacttttcaaaagttattatagacacagggaagtcagatttatat
gcagccaaagcctactgtgataatttactcaaaactctacaaactagagacctgttcgag
tggattgagcttgagccagtgcagttttggcattccttgcttttcatggatcagttcaac
tatggcggaatccaggctagactgaatggccaatcattagaaggtctttctgaatcagaa
agcggaagcgagcttgatgaatctcaagtagatattgtttcaagctggaatattgctgaa
aacttacctaagactactcaggatcacttcattttgattgtctcagaattcatatatata
ccatggaaatatgcacgagaacaaacagcaattagagcatcgatgagggatggcaactta
tgcactccatcaatatctggtgctgctgctgaaagttttgagtcacacatgacagaatat
ctcagggagcagatcagctcttacttcgcagataaacttctaaggattgttcgtgatgcc
attcatcaaacgaagggaatgaacaatcctagcgctgaccaacatatgtcctatggacat
ccacttgtcagtaatatccaaatgggtgatcctgcgctagagttcattaagcatgtctgt
gctgttctggctcttgatcaaaatgttcagcatgatattctgatcatgaggaggaatctc
ttaaagtatgtgcgcgtgagggagtttgctcccgaagctgaatttcgcgatcagtgtcta
tccttcactttgccaaatgtcatttgtagctactgcaacgactgcagagacctagacttg
taccatgacaaagcctttttggctcaagagtggcgctgtggtgtgccacagtgtgggcag
ccatatgatcgtgaggcaatggagaatattcttcttcagattgtacgacaaagagaacgc
ctctatcagcttcaagacctagtgtgcctaaagtgcaaccaggtcaaagcagcacactta
tctgtggtctgtgcttgtgctggatcatttagatgtaaggacgacgtgtctgagttccac
aacaaaatgcaggttttcttgaacatagctatccatcagaaatttcaattactacaagaa
tgtacttcatggattcttgaaatgaaatga

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