Rhododendron vialii: 131327258
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Entry
131327258 CDS
T09330
Name
(RefSeq) protein PIR isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131327258
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131327258
Factors involved in mRNA localization
Other mRNA localization factors
131327258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
131327258
NCBI-ProteinID:
XP_058216301
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All DBs
Position
5a:33360028..33435863
Genome browser
AA seq
1286 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQPDVQGPGVWVSTERGATNSPIEYTDVSAYRLSLSEDTKA
LNQLNTLIHEGKDMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREI
QRWQGSAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDILVQLDHLKNAKASIPNDF
SWYKRTFTQVSMQWQDNDSLREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYRRVKINRLINIFKNDPVI
PAFPDLHLSPAAILKELSMYFPKFTAQTRLLTLPAPHELPIREAQEYPRHYLIINHIGAI
RAEHDDFIVRFASAMNQLVLLKSMDGADVEWCKEVKGNMYDIVVEGFQLLSKWTARIWEQ
CAWKFSRPCKDAVPNMSHEMVTSSSDYEKVVRYNYSSEERKALVELVSYIKSVASMMQRC
DTLVANAVWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRVLSDMRTLSADWMANTSKPE
SEVQPLQHGGEESKGNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNSSSEI
PVNDLKQLETFFYKLSFFLHILDYTETVASLTDLGFLWFREFYLESSRVIQFPIECSLPW
MLVDHVIEAHSTGLLESVLMPFDIYNDSARQALAVLKQRFLYDEIEAEVDHCFDIFVSTL
CDTIFTYYKSLAASSLLDSSFLFSVENGEKFSVQPMRFTALLKMTRVKLLGRTINLRSLI
AGKMNKIFRENIEFLFDRFESQDLCAIVELEKLLNILQLGHELLSRDLSIDSFSLMLNEM
QENISIVSYSSRLASQIWSEMQIDFLPNFTLCNTTQRYVRSSKVPPASLQKPTIPHSKPS
FYCGTQDLNSAHQSSARLHSGFFGMPHMFSVVRLLGSRSLPWLIRALLDHVSNKITTLEP
LITGLQDALPKSIGLLPFDGGVTGCLRIVKEHLNLGSKSELKAEVLRGIKEIGSVLYLMG
LLDIVLREVDTTHFMQTAPWLGLIPGADGQILQAQEGADSPIVTLFKSATAATVSNPGLS
TQTSFYTISKQAEAADLLCKANMNTGSVLEYALAFTSAALDKYCTKWSAAPKTGFIDITT
SKDFYRIFSGLQIEYLEESVQVPPSHHEVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQV
LNIAEVEAVSITQTPKNSPSAQGWQALLEAMKKARRLNNHVFSMLKARCPLEDKQACAIK
QSGAPLHRVKFENTVSAFETLPQKGS
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcctgtcgaagaagccattgcagcattgtctactttctcgctggaggatgag
caaccagatgttcaagggccaggagtttgggtgtcaactgagagaggtgcaacaaatagt
ccaattgagtataccgatgtttctgcgtaccgcctatcattatcagaagataccaaggct
ctcaatcaactgaacacccttattcatgagggaaaggatatggcatcagtgctctatact
tatcgaagttgtgtcaaagcacttcctcagcttccagattccatgaagcaaagccaggct
gacttatatctagaaacatatcaagttctagacctggaaatgagtcgactgcgtgaaatt
cagcgctggcaaggatcagctgcatctaaactagcagctgatatgcaacgcttttctagg
ccagagaggcgtatcaacggccctactataactcatctctggtccatgttgaagttactt
gatattttagtgcaactggatcatcttaaaaatgcaaaagcaagcataccaaatgatttt
tcctggtataagaggaccttcactcaagtcagtatgcagtggcaagacaatgactcattg
agagaagagttagatgatcttcagattttcttgagcacaagatgggcgattttgttgaac
ttgcatgtcgagatgttccgcgtaaacaatgtagaggacattcttcaggtcctcatagtt
tttgctgtggagtcactggagttggattttgcacttctgtttccagagcggcatatcctt
cttcgggttttgccagttcttgttgtacttgcaacgtcatcagagaaagacagtgagtca
ctatataggagggtgaaaatcaatagactgatcaatatattcaagaatgatccagtcata
cctgcattcccggatcttcatctttctcctgctgcaattttgaaagagttgtctatgtat
ttccccaaattcactgcccaaactcgtcttctcactcttccagcccctcatgagcttcca
atccgtgaagcacaagaatatcctcgacattatctgatcatcaatcatattggagcaatt
cgcgctgaacatgatgacttcatagtccgtttcgcttcagctatgaaccagctagtgtta
ctgaaatcaatggatggtgcagatgttgagtggtgcaaggaagtcaaagggaacatgtat
gacatagttgttgaaggttttcagcttttaagcaagtggactgctcgaatttgggagcaa
tgcgcatggaaattctctcgtccctgcaaggatgcagttcctaatatgtcacatgagatg
gtgacatcatcttctgactatgaaaaggttgtacgatataattacagttcagaggaaagg
aaagcattggttgaacttgttagctacattaagagcgttgcatcaatgatgcaacgatgt
gatacattggtagctaatgctgtatgggaaacaatccatgcagaagtccaggattttgtg
caaaatacattagccactatgttgcggacgacctttcgaaagaagaaggacctaagtagg
gttctttccgatatgcgcacactttcagcggactggatggcaaatacaagcaaacctgaa
tctgaggtacaacccttacaacatggaggcgaagaaagcaaagggaacttcttttatcct
aggccagtggcacccactgctgcacaggtgcactgcttgcagtttctgatatatgaggtc
gtctcaggtggtaatctgaggaagcctggggggctctttgggaatagcagctccgagatt
cctgttaatgatttgaaacaactcgaaactttcttctacaagcttagctttttcttgcat
atattagactatacagaaactgttgcaagtctgacagatcttggttttttgtggttcaga
gagttttatttggagtcttctcgtgttattcagtttcctattgaatgctctcttccctgg
atgctggtggatcatgtgattgaggcgcatagtactggccttttggagagtgttttaatg
ccatttgacatttataatgattctgctcggcaagcgctggctgttctcaagcaacgcttc
ctctatgatgaaattgaagctgaggttgatcactgtttcgatatatttgtttccacactg
tgtgacactatttttacttactacaaaagtttggctgcaagtagtttacttgattcctca
tttcttttctccgtagagaatggggaaaagttttctgtccaacctatgagattcactgct
ctactaaagatgactcgagtgaagttattgggaaggacaattaacctaagaagtctgatt
gctggaaagatgaacaaaatattcagggagaatattgaatttttgtttgacaggtttgag
tctcaggacctgtgtgctattgtggaattggaaaagcttctgaatatcttgcaacttggt
catgaattgctgtccagagatctttcaatagactcattcagtctcatgttaaatgagatg
caggagaatatatctatcgtgtcatattccagtagacttgcttctcagatttggtcggag
atgcaaattgattttttgccaaacttcacgctctgtaatactactcagagatatgttcgt
tcatcaaaagtaccccctgcttctcttcagaagcctacaattccacattcaaagccgagt
ttttactgtggtactcaggatctaaattctgcacaccaaagctctgcgcggttgcatagt
ggattctttggaatgcctcacatgttttccgtcgtgaggctcttaggatctagatcatta
ccttggctcatccgtgctctactggatcatgtatcgaataagataactacccttgaacca
ttgattacaggattgcaagatgcactgccgaagtctattgggcttcttcctttcgatggt
ggagtaacaggttgtttgaggattgtcaaagaacatctgaatttggggtcaaaatcagaa
cttaaagcagaggttctacgtggaataaaggagatcggaagtgtattatacttgatgggg
cttcttgatattgttctgagagaagtagataccactcatttcatgcaaacagctccgtgg
ttgggcttgattcctggtgcagatgggcaaatattgcaggcccaagaaggggcagatagc
cctattgtcactctcttcaaatcagcaactgctgcaactgtgtcaaatcctgggctctca
actcaaacatcattctacaccatatcaaaacaggcagaagctgctgatctgttgtgcaaa
gcgaacatgaacactggaagcgtgctggaatatgcccttgcttttacaagtgcggcattg
gataaatattgtactaaatggagtgcagctccaaagacggggtttattgacattacaact
tccaaagacttctatcgcatatttagtggccttcaaatcgaatatctggaggaatctgtt
caagtaccaccaagccatcatgaagtgctgggggattcagtagcctggggtggttgtact
ataatatacctgcttggccaacaactgcactttgaactttttgatttttcctatcaagtc
ctgaatattgctgaagtggaagctgtatcaataacacagactccgaagaattctccttct
gcacaggggtggcaagcattgttagaagcaatgaagaaagcaaggaggttgaataatcac
gtattttctatgctgaaagcacgctgcccgctggaagacaaacaagcatgcgccatcaag
caaagtggcgcccctctacatcgcgtcaagtttgagaacacagtgtctgcatttgaaaca
ttgccacaaaaaggttcttag
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