Rhododendron vialii: 131329098
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Entry
131329098 CDS
T09330
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rvl03036
]
131329098
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131329098
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
131329098
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
131329098
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
TPR_DNAAF5
HEAT_GCN1_C
HEAT_EZ
Cnd1
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
131329098
NCBI-ProteinID:
XP_058218153
LinkDB
All DBs
Position
6a:24067942..24115327
Genome browser
AA seq
1439 aa
AA seq
DB search
MADAEVAERLISDIGKQLAARKTCPNKDLLVKLLRQAESAFPELDQSSSLEPSIKPLINS
LVKHNLLQHKDKDIRLLVALCFCEIIRVLAPSPDLTDVVFKDIFTLFLGLFADLADTTSP
YFPRRLKVLETLGKLNFFVLMFDTGCDDLVPKMFDIFFSVVREHHPQSLFSAMSSIIGHI
LKEKEKVTHSLIDIILQNLLKEEKGASPVARMLAVSVIRNCAEELETYVFEFLTSCIVNR
DGVRSDLKEFYHEIIYEVIQHAPQMLLNVIPTLTQELLADQVDVRIKAVKFIGRLLALPG
RHLAHEYHQLFLEFTKRFSDKSAEVRLGAISCAKAFYMTYSSGTEALEVLTALEGRLLDF
DDRVRTQAVVVVCDLARANLKSVPHELISRATERLRDKKVSVRKKALQKLLEVYRDYCTK
CATGIVTPIDQFEQIPCKILMLCYDKDCKEFSLQSMELVLAEELFPASLAIEERTRHWIF
LFSLFDSPHLKALNAILSHKRRLQAEMQVYLTLLKEENNGSEEVQKGIQTSLAKLASYFP
ESSKAEECFHKLNLEKDDKIFTTLAQLLDEVNLKSAESTRVNFLRKMGDRHPHFGFLQLL
SRKCLFSIFSSEHVQCILDQLLSDKLGNKNLENSTVKLLLGIISAFPSLLRGSENLFQSL
LLKDGVQIHEELILILAKAGPHIHIKISDIYPSLERVCLEGTRAQSKLAVSAIAALTNAS
ELFIFSELCETLVNALHGGQNIPTLLQSWGCLAQHAVSGFDSRHEEISRFIIENLLQSTN
VEKSDCIDSSDEKSGYSVSCKLKIFGLKALVRSFLPHRSTHVGHDINQLIDVLSKLLQNG
HVSDGIMSCESDMAYMRLAAAKSVLRLSRRWDLHIPPQIFRVTILMAKDSTALVCKPFTA
KIHKLLKQHAIPSKYACAFAIAASDSLENVRDESLKCMGEFVKEFRRKARTHQTSAKQQG
FTDYPEYIVVFLIHVLAHDSGFPPENCDDEEIYALFLRPFAFTLHALVNASFVDGDMDVI
HSAVSCLQKILFAIKQAEDAVDAHTTPRLVMLADFGISLLNALNYNANSETHTPGLILLP
SSLYRICPAEKRQEASFNCLARSHLIAKIAKRVALCFESQISHPSSARNKRGRKCQEDFS
KLEIIKCSTLNLPLHKTNDLFTYRTGQLSDASFSHGKEMHETLNQELNIRGRQKRALSPT
PRRSVELHNEFAIYDENEKSESGNSEPLIRREHLPSSCDSVTTEPSLTHMEDLKSSSVIV
NGVVGLCDRTGAELSKCTGMANLCSLKDFGNTSQELIGQRIKLWSSVDRCYYSGRVSGFD
HTNVTHKITYDNGQVEVVCLETENWETISNDFLQEKESNTSNSQHCDFVNHQTKLDDEFR
DDICPAKSFPIKSNKNFLKRKIPLPGKENKGQKLLMGTSRSEVIDENPEVRARRTRRRQ
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctgaggtcgcggagcgactcatctctgacattggcaaacaactggccgcc
cgaaaaacttgccccaacaaagaccttctcgtaaagttgctcaggcaagctgaaagtgct
ttcccggaactagatcagtcctcatctctagaaccttccataaagcccctgatcaattct
cttgtgaagcacaacctgcttcagcataaagataaggacattagacttctggttgcccta
tgtttctgcgaaattattcgggtcctggcaccgagtcctgatttgacagatgtcgtcttt
aaggacatttttacactttttctcggtttatttgcggatcttgctgataccacgagccca
tatttcccaagaagattaaaagtattggagactcttggcaaacttaatttttttgtgcta
atgtttgacactggttgtgacgatctagttcccaaaatgttcgatatctttttctctgtt
gtgagggaacaccatccacaaagtttgttcagtgcaatgtcttctattataggtcatatt
ctaaaggagaaggagaaagttacccattcgcttattgatatcattttgcagaatcttttg
aaggaggaaaagggtgcatctcctgtggctagaatgcttgctgtttctgtaatccgaaat
tgtgcagaagaacttgagacctatgtttttgaatttttaacttcttgcatagtgaacaga
gatggtgtacggagtgatcttaaagaattttaccatgaaatcatatatgaagtcattcag
catgctcctcaaatgcttctgaatgtcatcccaaccctgactcaagaattactggctgat
caggtcgatgttcggataaaagctgttaagtttattggtagacttttagctcttcctgga
cgccatcttgcccacgaatatcaccagctcttcttagaatttacaaagagattctctgat
aaatctgcggaagttagacttggtgctatatcatgtgccaaagctttctacatgacctat
tcatcagggacagaagcacttgaagttctcactgcgcttgagggccgtcttttagatttt
gatgacagagtgaggacccaagcggtggtggtcgtgtgtgatttagccagggctaacctg
aaatctgtcccacatgaactaatatctcgggctactgaacgacttcgtgacaagaaggtt
tctgttagaaagaaagcattgcaaaagttgctggaagtttaccgggactattgtacaaag
tgtgctactggtatcgtaacacctattgaccaatttgagcagattccgtgtaaaatattg
atgctgtgctatgataaagactgtaaggagtttagccttcaaagcatggagcttgtgctt
gctgaggaactgtttcctgcttctcttgcaattgaggagagaacacggcattggatcttt
ctgttctcactttttgactctcctcacttgaaagctttgaatgctattttatctcacaaa
cgaaggttgcaagctgagatgcaagtttacctgactctcctgaaagaagagaataatggc
tccgaagaagtgcaaaagggaattcaaacctctttagccaaactagcatcatacttccca
gagtcctccaaagcagaagaatgctttcataaattgaacttagaaaaagatgataaaatt
tttaccacattggcacagttgttggatgaagtgaatttgaaaagtgcggagtccacgaga
gttaacttcctgagaaagatgggggatagacatccacattttgggttcttacaattactc
tccaggaaatgcttgttcagtatatttagttccgagcacgtccaatgtattttagatcaa
cttttgagtgacaaacttggaaataaaaatctggagaattccactgtgaagcttcttctg
ggtatcattagtgctttcccgtccctattgagaggttcagaaaatctgttccaatcgtta
ttattaaaagatggtgttcaaattcatgaagagctgattctgatactggcaaaggcaggt
ccacatattcatatcaaaatcagtgatatttacccatcattggagagggtgtgtctggaa
ggaactcgtgcacagtccaagcttgctgtttctgcaattgctgcactgactaatgcttct
gagctatttattttctcagagttatgcgagacacttgtgaatgctttgcatggtggtcaa
aacattccaaccttgttgcaatcttggggttgcttggctcaacatgctgtttcaggattt
gacagtcgacatgaagagatcagtcgatttatcattgaaaatctattacagtctaccaat
gtggaaaagtcagattgtatagattcatctgatgaaaagtctgggtatagtgtttcatgc
aaattgaagatatttggccttaaagcacttgtcaggagttttttgcctcatagatcaact
catgttgggcatgatattaaccaattaatagatgttctgtcaaaattgctgcagaatggt
catgtttctgatggaataatgtcatgtgaatctgacatggcctacatgcgattagctgct
gcaaaatctgttcttcgcctgtcaagaagatgggatttgcatattccacctcaaattttt
cgtgttacaattttgatggctaaggattctacagctctggtatgcaaaccatttactgcc
aaaatacacaagcttttgaagcagcatgctatacctagcaaatatgcatgtgcctttgca
attgctgcctcagattccctagaaaatgtgcgagatgaatcactgaaatgcatgggagag
tttgtaaaggagttcaggagaaaagctcggacccaccaaacatctgctaagcagcaagga
tttactgactaccctgagtatattgtggtgttcttaatccatgttcttgctcatgattct
ggtttcccacctgaaaattgtgacgatgaagaaatttatgctctctttctcaggccattt
gcttttactctgcatgccttggtcaatgctagttttgttgatggtgacatggatgtcatc
cactctgctgtctcatgtctgcaaaaaatcctttttgctattaaacaggctgaggatgct
gttgatgcgcacacaactcctagattggttatgctagcagactttggaatttccttgttg
aatgcattaaactacaatgccaactcagaaacacatacccctggtttgattctgttgcca
tcatcattatacagaatttgtcctgctgaaaaaagacaggaggctagctttaattgtttg
gctcgatctcatcttattgcgaaaattgctaagagagtggctctttgttttgaatctcag
atctctcatccttctagtgcacgaaacaaacgaggccgaaaatgccaagaggatttttcg
aagttggaaattataaagtgcagcacgttgaacttgccactgcacaagaccaatgatttg
ttcacgtataggacaggacaactaagtgatgcttcattttctcatggaaaagagatgcat
gaaactttgaaccaggaactgaacataaggggtagacaaaaacgggctctctctccaact
cctcggagatcagttgaattgcataatgagtttgctatttatgatgagaatgaaaaaagc
gaatctggaaattctgaaccacttattcgaagagagcatcttccttcttcttgtgattcc
gtgaccacagaaccttcactgactcatatggaagatctgaaaagttcttctgtgatagta
aacggtgtggtaggattatgtgaccgtactggtgctgaactttccaagtgtacaggaatg
gctaatctttgtagcttaaaggattttggaaatacaagtcaagagttaattgggcagcgg
ataaaattatggtcatccgttgacagatgctactattcaggcagagtcagtgggtttgat
catacaaatgttactcacaagataacttatgacaacgggcaagttgaagtggtatgcttg
gagactgaaaactgggagacaataagcaacgacttccttcaggaaaaggagtctaacact
tctaattcacaacactgtgattttgtcaatcatcaaacaaaactggatgacgaatttcgg
gatgacatttgcccagcaaaaagctttccaattaagtcaaacaagaactttctcaagaga
aagatccctcttccagggaaggagaacaaggggcagaaacttttaatgggcacgtcaaga
tctgaagttattgatgagaatccggaagttagagctcgaagaactcggagacggcaataa
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