Rhododendron vialii: 131329605
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Entry
131329605 CDS
T09330
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
rvl
Rhododendron vialii
Pathway
rvl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131329605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131329605
03036 Chromosome and associated proteins [BR:
rvl03036
]
131329605
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
131329605
Coactivators
SAGA/TFTC/STAGA complex
131329605
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
131329605
STAGA complex
131329605
TFTC complex
131329605
SAGA complex
131329605
SLIK complex
131329605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
131329605
NCBI-ProteinID:
XP_058218812
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All DBs
Position
6a:41838167..41846001
Genome browser
AA seq
539 aa
AA seq
DB search
MSIVPKETIEVIAQSIGVSNLVPEVLPALASDVEYRVREIMQEAIKCMRHSKRTTLTADD
VESALKLRNVEPIYGVASGDPLRFKRAAGHNDLFYVEEKDVEFKDVIEAPLPKAPLDTAV
VAHWLAIEGVQPTIPENVSIEALAVPTDHKKTDYKEDGALVDIKLPAKHVLSRELQLYFD
KVTELAVNKSGSIIFKQALMSLATDSGLHPLVPYFTCFVADEVLRNLDHFSLLFAMMRLA
RSLLQNPHIHIEPYLHQLMPSVITCLVAKRLGNKYSDNHWELRDFTANLVASICKRFGHV
YHNLQSRVMRTLLHAFLDPTKSLPQHYGAIQGLAALGPRVVRLLVLPNLAPYLQLLETEM
QLDKQKNEMKRHEAWRAYGALSCAAGLCMYDLFPKVLFPTPRMTWKSKAKVLTAMPNKHK
ARTDDMKHQPPLKKLAIEGPMGVIPSNSMPGDMQGGFSNSPMGTDAGLPSISQQLTNERT
SGMSSRREKVGGLPPNMPTILAQAWKEDMDAGNLLPLLVEYFGESMLSFVPMPELSFFL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagcatagtgccgaaggagacgattgaggtgattgcgcagagcattggcgttagcaat
ttggttccagaggtgttgcccgccctcgcttccgatgtcgagtaccgcgttcgtgaaatt
atgcaggaggctatcaaatgcatgcgccattcaaagagaacaactttaactgcggatgat
gtggagagtgcacttaagttaagaaatgtggagcctatctatggcgttgcatcgggtgat
ccattgcggtttaagagagctgctgggcataacgatttgttttacgttgaggaaaaagat
gttgaatttaaagatgtgattgaagcacctctaccaaaagctccgctcgatactgccgtt
gttgctcactggctagctattgaaggagtacaacctacaattccagaaaatgtatcaata
gaagcacttgcagttcctacagatcacaagaagactgattacaaagaggatggagccctt
gttgatatcaaattacctgctaagcatgtgctgtctcgggagcttcagctctatttcgac
aaggtcacagaacttgcagtaaataaatccggttccattatttttaaacaagcattaatg
agcttggcgactgactcgggactccatccattggttccttatttcacttgttttgttgct
gatgaggttttgcggaatttggatcatttctcgcttctttttgcgatgatgcggcttgcc
cggagccttctccaaaatccacacatacacatcgaaccatatctacatcaattgatgccg
tctgtaattacctgccttgttgccaaaaggttaggcaataagtactccgacaatcactgg
gaacttagagacttcacagctaacctggttgcttcaatatgcaagaggtttggtcatgtg
tatcacaatcttcagtctcgtgtgatgaggactctgctccatgctttcttggacccaaca
aaatcattgcctcaacattatggtgccattcaaggtcttgcagcccttggaccccgagtg
gttcgcttgcttgtactaccaaatcttgcgccgtatttgcaacttctggagacagagatg
caacttgataagcaaaagaatgagatgaagaggcatgaagcttggcgtgcatatggggct
ttatcatgtgcagctggtctgtgcatgtatgatctgttccctaaggttctatttccaact
ccacgtatgacctggaagagcaaagcaaaagtgctgacagccatgccaaataaacacaaa
gcaaggacagacgacatgaagcaccaaccaccactcaagaaactcgccattgagggacca
atgggtgtaataccatctaactccatgccaggagacatgcaaggaggattttccaattct
ccaatgggtaccgatgctggtttaccatcaatttcacagcagctgacgaatgagagaacg
tcaggaatgagtagcagaagggagaaggtaggtggtctgcctccaaacatgccgactatt
cttgctcaggcctggaaggaggatatggatgcagggaatttgctgccgttgctagttgaa
tattttggcgaaagcatgctatccttcgtccctatgccagaattgtctttcttcttgtaa
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