Rhododendron vialii: 131329665
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Entry
131329665 CDS
T09330
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131329665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131329665
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131329665
mRNA degradation factors
5'-3' decay
Decapping complex
131329665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Egg_lysin
EIF3I
Motif
Other DBs
NCBI-GeneID:
131329665
NCBI-ProteinID:
XP_058218920
LinkDB
All DBs
Position
6a:42662618..42672382
Genome browser
AA seq
1442 aa
AA seq
DB search
MDPNQLGGPFDTHKFFKTPTSPNPITPNLGPPFYASPPSSYPPPTGPYSQFQQFPLPPYP
QQDYHHHPHHHLANLHQQRSVSYPTPPLQPPPQQNPNQQNPNAGAKLMALLSAPAASSIE
MPMGPIQPTPSGSSEFSMPLNMPVLPSVPSALSAPNVNPNPAVVFAPSGPMRMLSSKLPK
GRHLIGDRVVYDIGARLEGEVQPQLEVTPITKYISDPGLVLGHQIAVNKTYICYGLKLGN
IRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYVWKITEGPDEDDKPQI
TGKIVIAIKIEGEGESVHPRVCWHCHKQEVLVVGIGKSVLRIDTTKVGKGVAYSAEEPLR
CPIDKLIDGVQHVGKHDGEVTDLSMCQWMTTRLVSASTDGTIKIWEDRKAQPLVVLRPHD
GQPVNSVTFVTSPHRPDHIILLTAGPLNREVKIWASAGEEGWLLPSDAESWHCTQTLELK
SSAESRVEEAFFNQAVALSQAGLLVLANAKKNAIYAIHLEYGPNPAATRMDYIAEFTVAM
PILSFTGTSDILPHGQHIVQVYCVQTQAIQQYALDLSQCLPPPLDNVVIEKSDSSAVRDV
ASTEGFATLERSGNKPTEISLSNSAPSPSILDSVSENAPTMRHPMSSASIQTANIAEFTS
LSAESGSTSLPTVTSNNDISCVASPPLPPSPKLSGKLSGIRSPTNGLEAGRMLHDRGEDQ
QVIEYSVDRQMDSVHTKLSDVPSLDDDARNDENKVVREDITAALNQALEFKHPTHLVTPS
EILMAASSSEAGHVTEDKSEGEPTIQDVVVNNDMHSVEVEVKVVGETGVSQKSEIGSQGE
PHNIVQENRGRVFCSQASDLGIEMTRDCPALSSEMYIVEESRQFNGANLSDELAPPSTAE
EEVHDSTKDISGVNASSAMPATVLQPVAPTMKGKKQKGKNTQGSGTSSPSPSAFNSTDSS
SEPGVSSSIASVEAAFSQIMAMQEMLNQLTNMQKEMQKQMTTTVTASAKEGRRLEIALGK
SMEKAVKANTDALWARMQEENAKQEKLGRERTQQMTSLITNFINKDLPALVEKIVKKEFT
TVGQNVARTISPAMEKAMSVAIAEAFQKGVGDKAVNQLEKSVNLKLEATVARQIQAQFQT
SGKQALQETLKSSLEASVIPAFEMSCKAMFEQVDTTFQKGMIDHATVAQQQFESTHSPLA
LALRDAINSASSLTQTLSGELADGQRKLLALAASGANSKAVNPLVTQLSNGPLGGLHDKI
EAPLDPTKELSRLVSERKYEEAFTAALQRSDVSIVSWLCSQVDLQRILAMVPLPLSQGVL
LSLLQQLACDISKDPARKLAWMTDVAVALNPTDPMIAVHVRPIFEQVYQILNHHRSLPTA
SSTELSSIRVLMHVINSMLMSVFKFKDACSPVKKNEDRDICPLEECFSIDKANDTHLYSQ
SQ
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaaccaactaggtggaccattcgacacccacaagttcttcaaaacccctact
tccccaaatcctatcactcccaatttgggtcctcctttttatgcttcacccccttcctcc
tatccaccgcccactggcccttactcccaattccaacagttccccctccctccttacccg
cagcaggattaccatcaccatcctcatcaccacctcgctaacttgcaccagcagagatct
gtttcttatcctacccccccactccaacccccgccccaacaaaaccctaaccaacaaaac
cctaacgccggggctaagctcatggctttactgagtgctccagctgcatctagtattgag
atgccaatgggtccaatccagcccaccccatctggctcttcagaattctcaatgccactc
aatatgcccgtactgccctcagttccttccgcgctttccgcgcccaacgttaatcccaat
ccagctgttgtgtttgctccttcggggcctatgcgtatgctgagcagcaaactgccgaaa
gggcgtcatttgattggcgatcgcgtggtgtacgatattggtgctaggttagaaggtgag
gtccagccgcagctggaagtcacgccgataactaagtatatttcggatcctgggcttgtt
ttgggccatcaaatcgcagtcaataagacgtatatatgctatggactcaagctgggaaat
atccgggtccttaacataaacactgcattgagatcattgcttaaaggcctagcccagagg
gtgacggacatggctttctttgctgaggatgttcaccttttggctagtgcaagtgtagat
gggcgggtttatgtatggaagattacagaaggcccagatgaagacgataagccacagatt
acaggaaagatagtcattgccattaagatagaaggagaaggcgaatcagttcatccgcga
gtttgttggcactgtcacaaacaagaagttctagtagttgggattggtaagagtgttctg
agaattgatactacaaaagttggaaaaggtgtagcatattccgcagaggagcctctaagg
tgtcctattgacaagttgattgatggggtccaacatgttggtaaacatgatggagaagtg
actgatttgtcaatgtgccagtggatgactacccgtttggtttctgcttcaacagatgga
acgataaaaatttgggaggatcggaaagcacaaccgctcgtggtgctaaggccacacgac
ggtcaacctgttaattctgttacattcgtgacttctcctcaccgcccagatcacattatc
cttctaactgcgggtccacttaatcgggaagtgaagatatgggcctcggcaggtgaagaa
ggctggctacttcctagtgatgccgaatcatggcattgtacccagacgttggaattaaag
agttcagctgaatctcgagttgaagaggcgttctttaatcaagctgtggccttgtctcaa
gcagggcttctggtattggcaaatgcaaagaagaatgctatatatgccatacacttggag
tacggacctaatcctgcggcaaccagaatggattacattgcagagtttactgtcgccatg
ccgattctgagttttacagggaccagtgatatattacctcatggccaacacattgttcag
gtttattgtgtccagacacaagcaattcaacagtatgctttagacttatcccagtgcttg
ccaccaccactggataatgttgtgatagagaagtcagactcaagtgctgtgcgtgatgta
gctagtactgaagggtttgctactttggagcgttctggaaataaacctactgagatttca
ttgtctaattcagcacccagcccatctatactggacagtgtctctgagaatgcacccaca
atgaggcatccaatgagttctgcttcaatccagaccgccaatatagcagaattcacttct
ttgagtgcggaatctggatccacttctttgcctactgtaactagcaataatgatatttca
tgtgttgcatcaccccctcttcctccaagtccaaagttgtctggaaaactctctggaatt
agaagtccaacaaatggcttagaggcgggtcgtatgcttcatgatcgtggtgaagaccaa
caagttattgaatattcagtggataggcaaatggatagtgttcatacaaagttgtctgat
gtgccttccttggatgatgatgctagaaatgatgaaaacaaggttgtacgagaagatatt
acagctgctctcaatcaggctcttgagttcaaacacccaactcatcttgtaactccatct
gagatattgatggctgcttcatcctccgaagctggacatgtcactgaagacaagagtgaa
ggagagccaaccattcaagatgtggtcgtcaacaacgatatgcacagtgtggaggtggag
gttaaggttgtgggtgagactggagttagtcagaaaagtgaaattggctctcagggtgaa
cctcacaatattgttcaagaaaatagggggagggtgttttgctctcaggcctcagatctt
ggcattgagatgaccagagattgtccggcattatcgtctgaaatgtatatcgtggaggaa
tctcgacaattcaatggagctaatttaagtgatgaattggctccgccttcaactgctgag
gaagaagtccacgattccacaaaggatatctctggagtgaatgctagttcagctatgcct
gcaacagttctgcaaccagtggcaccaaccatgaaaggcaaaaagcaaaagggtaagaac
actcagggatcaggaacatcatcgccatccccgagtgccttcaattcaacagattcttcc
agtgagcccggtgttagttcgagtattgcttctgtggaagctgctttttcgcaaattatg
gctatgcaagagatgctcaatcagttaacaaacatgcaaaaagaaatgcagaaacagatg
acgactacggtaactgcctcagctaaagagggtagaaggctggagatagccctagggaaa
agcatggagaaagctgtcaaggccaatactgatgcattatgggctcgtatgcaagaggag
aatgcaaaacaggagaaactgggtagagagcgtacacagcaaatgacaagtttgatcact
aacttcataaataaggacttgccagctttggtggagaagatagtgaagaaggaattcact
actgttggacagaatgttgctcgcactatttctccagctatggaaaaagcaatgtctgtt
gctattgcagaggccttccagaaaggggttggcgataaggcagtgaatcaactggagaaa
tcggttaatttgaagcttgaagctactgttgctaggcagatccaagcacaatttcaaacg
tctggcaagcaagctcttcaggaaacattgaagtctagtttggaagcttctgttattcct
gcctttgagatgtcatgcaaagccatgtttgagcaagttgacactacctttcagaaagga
atgattgaccatgcaactgtagctcaacagcagttcgagtccacacattctccactggca
cttgctttaagggatgccattaattcagcatcgtccttgactcaaactttaagcggggaa
ttggctgatggtcagagaaaattgttagctcttgctgcttcaggagcaaattcaaaagca
gtgaatcccctggttactcaactgagcaatggacctttgggtggcctccatgataagatt
gaggctcctttggatcctactaaagagctatctagattggtatctgaacgtaaatatgag
gaagctttcaccgcagctctgcaaagaagtgatgtttccattgtatcttggttatgctct
caggttgatttacaacggattttggccatggttcctctccctctaagccaaggagtacta
ctatcacttctgcagcagctggcctgtgacattagcaaagacccggcccgcaagttggca
tggatgacagatgtggcggtggccctaaacccaactgacccaatgatagcagtccatgtg
cggccaatctttgagcaagtctatcagatactaaaccatcatcgtagccttcccacagct
tccagcactgagctttccagtatccgtgttttgatgcacgtcatcaactccatgctgatg
tctgtattcaaattcaaagatgcttgcagtccagtcaagaagaacgaggacagagacatt
tgcccattggaagaatgtttcagtatcgataaagctaacgacacgcatttatattcacaa
tcacaatga
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integrated database retrieval system
