Rhododendron vialii: 131330226
Help
Entry
131330226 CDS
T09330
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03020
RNA polymerase
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131330226
09124 Replication and repair
03420 Nucleotide excision repair
131330226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131330226
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131330226
Enzymes [BR:
rvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131330226
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131330226
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131330226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
131330226
NCBI-ProteinID:
XP_058219712
LinkDB
All DBs
Position
6a:30680400..30692020
Genome browser
AA seq
1205 aa
AA seq
DB search
MYGEDEYDPSLIDHSQIVSVGDGGDGDGDGDDEQEISQEDAWTVISAYFEEKGLVRQQLD
SFDEFIQNTMQEIVDEAADIEIKPESQHIPGRQSDFVEMVYRISFGQIYLSKPMMTESDG
ETASLFPKAARLRNLTYSSPLYVDVTKRVVKKGHDCEEVTETQEFTKVFIGKVPIMLRSS
YCSLYQTSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKIRQPNKYAYV
SEVRSMAESQNRPPSGMFVRMVSSSGAKGGSSGQYIRATLPYIRTEIPIVVVFRALGFVA
DKDILEHICYEFTDNKMMDLLRPSLEEAFVIQNQQVALDYIGKRGSAVGVTKERRIRYAK
EILQREMLPHVGTGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYANKRLDLAGPLL
GGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANSAG
SRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG
LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPLATKIFVNGCWVGIHRNPE
LLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDCGRCSRPLFIVEKQKLLIKKKDILG
LQQRESPEEVGWHDLVAKGYIEYVDTEEEETTMISMTINDLTSARLCPDDAYSETYTHCE
IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP
LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE
EKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDD
AQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRH
GQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
TPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTYMIFLGPTYYQRLKHMVDDKIH
SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCA
LCGIVAIANLKKNSFECRHCKNKTDIVQVYIPYACKLLIQELMSMAIAPRLLTKDIDSGD
GKKRV
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgtacggggaagacgaatacgatccgagtttgattgatcatagtcagattgtgagtgtg
ggggatggtggcgatggcgatggcgatggtgatgatgagcaggagatttcgcaggaggat
gcatggacggtgatcagcgcgtattttgaggagaagggattggtgaggcaacagctcgac
tcgttcgacgagttcatacaaaacacaatgcaagagatcgtggacgaggctgctgatatc
gagattaagcccgagtctcagcacatccctggccgccaatccgacttcgtcgagatggtt
taccgaatcagcttcggtcagatatacctgagcaaaccgatgatgacggagtctgatgga
gaaactgcctctcttttcccaaaggctgcaagattgaggaacctgacctactcatctcca
ttgtatgtggatgtcacaaaaagagttgttaagaaaggccatgactgtgaagaggtcact
gagacacaggagttcactaaagtttttattggaaaggttccaattatgctccggtcaagc
tattgtagcctgtatcagacctcagagaaggatttaactgagcttggagagtgcccattt
gatcaaggagggtacttcattatcaatggcagtgagaaggttctgattgctcaggagaag
atgagcaccaaccatgtctatgtgttcaagattaggcagcccaacaaatatgcttatgta
tccgaggtccggtccatggcggagtcccaaaacaggcctcctagcggcatgtttgtcagg
atggtttcttcctctggtgccaaagggggatcttctgggcaatacatccgtgcaaccctt
ccatacattcgtactgaaatcccaattgttgttgtgttccgtgcactgggatttgttgca
gacaaggatatattggagcacatatgttatgaatttacagacaataaaatgatggattta
cttcgtccatccttagaagaggcatttgtaattcaaaatcaacaggttgcgcttgattat
attggaaaaagaggatctgctgtgggtgtcactaaagaaaggaggattaggtatgccaaa
gaaatacttcaaagagaaatgcttccccatgttggcacgggggaatattgtgaaactaag
aaggcttactactttgggtacatcatccatcggcttttgctttgtgcccttggccggagg
ccagaagatgatagggatcactatgcaaataagagacttgaccttgctggtcctctactt
ggaggcttgttcagaatgttattcagaaagttaaccagggatgtgaggtcctatgttcag
aagtgtgttgacaacgggaaggatgttaacttacaatttgctattaaagcaaaaacgata
acaagtggcctgaagtactctcttgctactgggaactggggacaagcaaattcagctggc
tctagagcaggagtttcgcaggttttgaatcgtttaacatatgcatccactctctcccac
ctgagaaggttgaactcgcccattggacgtgaaggtaaattggcaaaaccacggcagttg
cacaactcgcattggggaatgatgtgtcctgcagaaactccagaaggacaagcctgtgga
ttggtcaagaaccttgccttaatggtgtatataacagtgggatcagcagcaaatcccata
ttggagtttctggaggagtggagcacagagaactttgaggaaatttctcctgcagtaatc
cctctagctaccaaaatttttgtcaacggttgctgggttggtattcatcgtaaccctgag
ctcttggtgagaactcttagacagttaagaagacaggtcgatgtcaacactgaagttgga
gttatccgtgacattcgtctgaaagaactccgactttatacagactgtggccgctgtagt
agaccattgtttattgtagagaaacagaaactactgataaagaagaaggatatcctaggt
ctgcaacaaagagagtcccctgaggaagttggttggcatgatcttgtggcaaaaggatac
atagagtatgttgatacagaggaagaggaaactacaatgatttccatgaccataaatgat
cttacatctgcacggctctgcccagatgacgcttattctgaaacttatactcactgtgaa
atacatccatcactaatattaggagtttgtgcttctattatcccatttcctgatcataac
cagtccccccgtaatacctaccaatctgcgatggggaagcaagccatgggaatttatgtg
accaattaccagttacgaatggatacactagcctatgttctctactatcctcagaagcct
ctagttacaactcgtgccatggagcatttgcattttaggcaactaccagctggcattaat
gccattgttgcgattgcttgctattctggatataaccaggaagattctgttattatgaac
caatcttcaattgatcgcggattcttcagatctatattctaccgttcatacagggatgag
gagaagaagatgggaacacttgtgaaggaggactttgggtgtcctaatagggaaaatacc
atgggaatgcgacatggatcttatgacaaattggatgatgatggctttgcacctcctggg
acaagagtagcaggtgaggatgttatcattgggaagaccacaccaattgcaccggatgat
gctcaaggacaaactgcacgatacacgcgtcgtgatcatagcacgtgcttgcgccatagt
gaaagtggaatggtggatcaggttttattgaccacaaatgctgatggattgaggtttgtt
aagatgaggatgagatcgattcgcatacctcagattggagacaaattcagcagtaggcat
ggacaaaagggaacaattgggatggcttacacccaggaagatatgccatggacaattgag
ggcatctgtccagacatcattgttaacccgcatgccattccttctcgaatgaccattggt
cagctcatcgagtgcatcatggggaaggttgctgctcacatgggaaaggagggagatgca
actcctttcactgatgtcactgtggacaacatcagcaaagcccttcacaaatgcggttac
cagatgcgcggattcgagagaatgtacaatggtcacactgggcgcccgctgacttatatg
atattcctgggccctacttactaccagaggcttaagcacatggtggatgacaagatccat
tctcgtgggcggggcccagtccagatccttactaggcagcctgctgaagggcgatctcgt
gatggaggtctgcgatttggtgaaatggaacgtgactgcatgattgctcacggggctgca
cacttcctcaaagagaggctgtttgaccagagtgatgcgtatagagttcatgtatgtgct
ctgtgtggtatagtcgccattgccaatctgaagaagaactcattcgagtgtagacattgc
aaaaataaaaccgacattgttcaggtgtacataccttatgcctgtaagcttcttattcag
gagctcatgtccatggcaatcgccccaaggttgctaacaaaggatatagattcaggagat
gggaagaaacgagtctaa
DBGET
integrated database retrieval system
