Rhododendron vialii: 131330242
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Entry
131330242 CDS
T09330
Name
(RefSeq) 5'-3' exoribonuclease 3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03008
Ribosome biogenesis in eukaryotes
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131330242
09123 Folding, sorting and degradation
03018 RNA degradation
131330242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131330242
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131330242
03009 Ribosome biogenesis [BR:
rvl03009
]
131330242
03016 Transfer RNA biogenesis [BR:
rvl03016
]
131330242
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131330242
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
131330242
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
RNases
131330242
Transfer RNA biogenesis [BR:
rvl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
131330242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF530
Motif
Other DBs
NCBI-GeneID:
131330242
NCBI-ProteinID:
XP_058219734
LinkDB
All DBs
Position
6a:complement(2691289..2709435)
Genome browser
AA seq
1133 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVIEEEPVEIEGVKIPVDTSKLNPNSIEFDNLYLDMNGIIH
PCFHPEDRPSPRTFDEVFQCMFDYIDRLFIMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEEKLREEFEREGRKLPAKQESQVFDSNVITPGTEFMGVLSVALQYYIHL
RLNNDPGWKSIKVILSDANVPGEGEHKIMSYIRLQRNLPGHDPNTSHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCKGKAKRKAGEFDGKGDADVVAKK
PYQFLNIWTLREYLEYEMRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLLAVYKKEFRALGGYLTDASKPNLSRVEHFIQVVGSYENKIFQKRARLHQNQAERIK
REKAQTKRGDDIEPQVKPDSIVPVARYHGSRLASASSPSPYQHKGFGYSTASTSSVRNEN
LLGQVTMDVSVLDICNKKPETSDDKQNYFRARKSARLASGATVGAAVVEAENSLEIEMHE
NKEELKTKLKELLREKSDVYSSENPDEDKIKLGDPGWKERYYEEKFSAKSPEELERMRKD
VVLQYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLSKLSISFELGSPFKPFNQL
LGVLPAASAHALPEHYRRLMTDPNSPIIDFYPSDFEVDMNGKRYAWQGVAKLPFIDEARL
LAEVAKVEHTLTEEEVRRNSMMFDMLYVALSHPLSPYIFSLDDRYKQLTDKERAEIKEQL
DPRASDGMNGYISLCAGDPCPPVFRSPVGGMEDVMNNQVISAIYRLPDAHEHIARPPAGV
IYPEKTVTMGDLKAEPPLWHEDFGKRPWENGRHLPNGTISGRQLGEASHRLVVNSLQLRT
DRNGFSNQQHGRPLSSYQNNRYHDNERNKMVPPRTGYHPQTSHGHHRPQNPSPVQNHFNQ
SYRGPHASLVSHDAYSGYHSQYKRNNHSTDQNRDYSSRFQQYGRNRYPGQGPPRVGVQRP
VQSAAQFQQQGGYPLQFQQYGGNRYAGQGPPHRGVSTPIPNRAQFHQQGGYNYGSYQHYG
ASNYTSYRASATWVPLANQSGGREGIRPQQVGGQLSALDQGASRNPPPPRYNH
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcattttacaggtggttggcggagaagtatccgttggtggtggtggat
gtaatcgaggaagaacctgtcgaaatcgagggcgtcaagattcccgtcgacacgagtaaa
cttaatcccaacagtatcgaattcgacaacctttatctcgatatgaacgggattattcac
ccttgttttcatcccgaggaccgcccctctcctagaactttcgatgaggtgttccagtgc
atgtttgactatatagacagacttttcataatggtgcgaccccgaaagctactatacatg
gctattgatggtgtagccccgagagcaaaaatgaatcaacagcgatctaggcgttttaga
gctgctaaagatgcagcagatgcggcagctgaagaagaaaagttgcgcgaggagtttgag
agggaaggcagaaagctccctgcgaaacaggaatcacaagttttcgactctaatgtgatc
actcctggaactgaatttatgggcgtcttatccgtagctttgcaatactatatccatctc
cgtcttaacaatgatcctggatggaaatctattaaggttattctttctgatgcaaatgtt
cctggtgaaggagaacacaaaataatgtcgtatattcggcttcaaaggaatcttcctggt
catgatccaaatacaagccattgcttgtacggcttggacgctgatctaatcatgttggct
ttagctactcatgaagtccatttttcaatactcagggaggttgtattcacccctggacaa
caagacaaatgttttctatgtggtcaaatgggccatttggcagcagactgtaaaggcaag
gcaaagagaaaggcaggggagtttgatgggaaaggtgacgctgatgttgtggccaaaaag
ccttaccagtttctcaacatttggacgcttagggagtatttggaatatgaaatgagaata
ccgaatcctcctttcgagattgatctcgagtgcattgtcgatgacttcatcttcatgtgt
ttctttgttggcaatgactttttgccacatatgcccacgctggagattcgtgagggtgca
attaacttgctgttggctgtgtataagaaggaatttagggcattgggcgggtatttgact
gatgcgagcaagcctaatctgagcagggtggagcacttcattcaggttgtgggatcatat
gagaataagatattccagaaaagagctcggctgcatcagaatcaagctgaaagaatcaag
cgggaaaaggcgcaaacaaaaagaggagatgatatagaacctcaagttaaacccgattct
attgtacctgttgctcgttatcatggttctcgtcttgcttcagcttcgtcaccttcacca
tatcagcataagggatttggttacagtacagcaagcacgtcgtctgttagaaatgaaaac
ttacttgggcaggtcactatggatgtatcagtccttgacatttgtaacaagaagcctgag
acatctgatgataaacaaaactatttccgggctagaaaaagcgcacgtttggcatctgga
gctactgttggtgctgctgttgttgaggcagagaatagtcttgaaatagaaatgcatgaa
aacaaagaagaattgaaaacaaagctaaaggagttgcttcgcgagaagtctgatgtatac
agttctgaaaatccagacgaggacaagatcaaattgggagacccaggctggaaagagagg
tactatgaagaaaagtttagtgcaaaatctcccgaggaacttgaacggatgcgaaaagat
gttgttttgcagtacacagaaggtctgtgttgggttatgcactattactatgaaggggtt
tgttcctggcaatggttttatccttatcattatgcaccatttgcttcagatctcaaggat
ctgagcaagctgagcataagcttcgaactgggttccccattcaagccattcaatcagctg
ctgggggttttacctgctgcaagcgctcatgctcttccagagcattataggagattgatg
actgatccaaattcgcctatcatagatttttatccatctgatttcgaagtcgacatgaat
ggaaagcggtatgcttggcagggtgtggccaagttgcctttcattgatgaagcccgtcta
cttgcagaggtcgcaaaagttgaacatactttgacggaggaagaagtgcgaagaaatagc
atgatgttcgacatgctttacgtggcgttatctcaccctttatctccttacatattctct
ctggatgaccgctacaagcagttgacagacaaggaaagagctgaaatcaaggagcaactt
gatccaagggccagcgatgggatgaatgggtatatatccctttgtgctggagatccttgc
cccccagttttcaggtcacctgttggtggaatggaagatgttatgaacaatcaagtcata
agtgctatttacagacttccagatgcccacgaacacatcgctcgtccacctgcaggggtt
atatatccagagaagactgttacgatgggggatctaaaagctgagcctcctttatggcat
gaggactttggaaagaggccgtgggaaaatggaaggcacctcccaaatggaactatttct
ggtcggcagcttggtgaggcttcacaccgccttgtagtaaatagcttacaattaaggact
gatcggaatggttttagcaatcagcagcatggccgacctttatcttcctatcaaaataac
agataccacgataacgaacggaacaagatggtgccacctaggacaggctatcatcctcaa
acttcccatggtcaccacaggccacaaaatccctctccagtacaaaatcatttcaaccaa
agttatcgtggtccgcatgcttccttagtttctcatgatgcatacagtgggtaccattct
cagtacaaaaggaacaatcattctactgaccaaaatagggactattcatcacgattccaa
caatatggtagaaacaggtaccccgggcaaggccctcctcgtgttggagtccaacgtcct
gtgcagagtgcggcccagtttcaacaacagggtggatatccactgcaattccaacaatat
ggtggaaacagatatgctggacaaggcccgcctcatcgtggggtctcaactcccattcca
aatagagcccaatttcaccaacagggcggatacaactatgggagctaccaacattatgga
gcttccaactacactagttaccgagctagtgctacctgggtccctctggcaaaccagagt
ggtgggagagaaggtattcgtcctcaacaagtaggcggtcagttgtcagcattagatcag
ggagcaagcagaaatccaccacctcccaggtacaaccattag
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integrated database retrieval system
