Rhododendron vialii: 131330588
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Entry
131330588 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131330588 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131330588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131330588
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131330588
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131330588
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131330588
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
DUF6795
Motif
Other DBs
NCBI-GeneID:
131330588
NCBI-ProteinID:
XP_058220201
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All DBs
Position
6a:32235208..32248769
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AA seq
639 aa
AA seq
DB search
MLPNFNSLPYHRPNQVPTVGPIAASTSHQQAISSDHCQGNPSNLFAQTQSQMGLINPQTA
TPFDNSTTYHVGNNRPMVLSNRPMGAPNHSLPMQTGAPVLGSTIAMPHLGQYPGGGFCPQ
NLNPMSLAPMNLIQSPNQFFAHNFGNLPQYPSPNPIFRNGQFCLQNPMQAINQFVQMPQS
NCGQPDPRSMHLYSNQVSQGLAPQNPAFFPNPQFGILHTNAGLQLNQDQHKLALSTMGAN
ATAQSHNNTQGSQGNSPLPPSFASALPQHTQKDFHSSGSAESQGNLRKDSGINNWNNNWK
NSQNRKFTRDLTRDESHRGFSKPQFHNVQNAKGKFSFHNKHGGKGKLANSSNQAQVVQRR
SLSVNYTEQEIKQWREERRNNYPSKCNANKKLAETDVIVQDAMLRRQRLKEILAKQAELG
CEVAEIPPCYLSDSEKQGCRKEVGNKALTKKNFQNKYNKWGRFHRKERFSKKQLLADHDS
SHLTNPDEQFSKKQKLRDNDSRTMPYLNKKQPTLLQRLLSADIRRDKHRLLQVFRFMVMN
SFFKDLPEKPLRFPLVRVTNNTSEGEVVEGKLPSPGNGVSEACDKTASGETEYGDYPDDE
GGADYEREHDALAKEAALFVSSKGGEPEELEEEEGEIID
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctaacttcaactcgctcccttatcaccgtcccaaccaggtacccaccgttgga
cccattgctgcttcaacttctcaccagcaggctatttcatcagatcattgccaagggaat
cccagtaacttattcgcacaaactcagtctcaaatgggtctaatcaatccccaaactgca
accccctttgataattcaactacttatcatgtgggaaacaatcggcctatggtcttgtca
aataggccaatgggtgctcccaatcattctcttcctatgcaaaccggtgcgcccgttttg
ggttcgaccattgctatgccgcaccttggtcagtaccccggcggtgggttctgtccccaa
aatttgaatcccatgtccctagctccaatgaatctgattcaatcacctaatcagtttttt
gctcataattttggaaacctgcctcagtacccaagcccgaatcccatttttcggaatggt
cagttctgtttgcagaatccaatgcaagcaattaatcagtttgttcaaatgcctcagtcg
aattgtggccaacctgatccccgtagtatgcacctttactcaaatcaagtttctcagggt
ttggcacctcaaaatcccgcatttttcccaaatccgcagtttggtattttgcatactaat
gcaggtttgcaactcaaccaagatcagcataagttagctctctcgacaatgggcgctaat
gccacagctcagtctcataataacactcaagggtcacaggggaactcacctctaccgcct
tcttttgcttcagctctaccgcaacatactcagaaagatttccactcttctggttctgca
gagtcacagggaaatcttcgaaaagatagtgggattaataattggaataacaattggaag
aattctcaaaacaggaagttcactagggatcttacaagggatgaatcgcataggggattt
tcgaagccccagtttcataatgtgcaaaatgcaaaggggaagttcagttttcataataaa
cacgggggaaaaggcaagcttgcaaattcttccaaccaagctcaggtcgtacaaaggaga
tctctatctgtgaattacacggaacaagaaataaaacagtggcgtgaagaacgcaggaac
aactacccatcaaaatgcaacgcaaataagaagctggcagaaactgacgttatagtccaa
gatgccatgttaaggcgccagcgactcaaagaaattttagcaaaacaggctgagttaggt
tgtgaagtagccgaaatcccaccatgttatctttcagattcggagaaacaagggtgcaga
aaggaagtaggtaacaaagcattgacgaagaagaacttccagaacaagtataataaatgg
ggaagattccatcgaaaggaaaggttttcaaagaagcaactactagcagaccatgattca
tcacacttgaccaatccagatgaacagttctccaagaagcagaagttgagagacaatgat
tcacgcaccatgccttatttgaacaaaaagcagccaacccttttgcaaaggctactgagt
gcagatattagaagagataaacatcgtttgttacaggtttttaggttcatggtgatgaat
tctttcttcaaagatttgcctgagaagccgctaaggtttcctttggtaagagttaccaac
aatacatcagagggagaggtggttgaaggaaaacttccgagtccaggaaatggtgtttct
gaagcctgtgacaagactgctagtggagaaactgagtacggcgattatcccgatgatgag
gggggtgcggactatgaacgtgaacatgatgcgctcgctaaagaagcagccctttttgtt
agctcaaaaggaggtgaacctgaggagcttgaggaggaagagggagaaattattgactaa
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