Rhododendron vialii: 131330787
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Entry
131330787 CDS
T09330
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rvl
Rhododendron vialii
Pathway
rvl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131330787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131330787
03036 Chromosome and associated proteins [BR:
rvl03036
]
131330787
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131330787
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131330787
PBAF complex
131330787
GBAF(ncBAF) complex
131330787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
Methyltransf_30
Motif
Other DBs
NCBI-GeneID:
131330787
NCBI-ProteinID:
XP_058220496
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Position
6a:401833..408039
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AA seq
539 aa
AA seq
DB search
MSTNSPTAEELPNLAAETTPLKPESAAGTTPQKPESVSTTNPTATPTKENPATATPTVHS
KENSATVPLTVDSKINSAIATPPPPEPPSTPAAAAAPTTSTDLVYIPTYSRWFSFNNIHE
CELRFLPEFFDGKSPSKNPRVYMYYRNSIVRKFRENPTTKITFTEARKTIIGDVGSVRRI
FDFLEAWGLVNYSPPPASKLPLKWDDKETKSITALLQSTEPTMNVAECMVPKKKLCSGCK
SVCSIACFASDKYDLTLCARCYVRGNYRVGVSSSDFRRVEINEEIKTDWTEKEILLLLES
TMQYGDDWKKVAEYVGGRSEMECVTRFIKLPFGEQYLGPSDSCEVSQKLYQTKDQNVAAS
GLQSSEKSFPNKRMRLNPLADASNPIMAQAAFLSALVGVEVAEVAASAAVRALAEFGYGA
IKEHPRLLSSHGRQQEPDASSNGDATLKTSEGLDIDVQSQLDKEEQDLERAMSSITEVQM
KEIQDKISRFEKYESQMEREWQQLQQMKNMIFVDKLTLLLDKTRAQKAGGSMQQDAKTE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaattcgccaacagccgaggagctcccaaacctcgccgcggaaaccactccc
ctaaagccagagtcagcggcgggaaccacgccccaaaagccagagtccgtctctacaaca
aatccgaccgccactcccaccaaagaaaaccccgccaccgctactcccactgtccactcc
aaagaaaactctgccaccgttcctctcaccgtcgactccaaaataaactccgccatcgct
acccccccgcctccagaaccaccttcaacccccgccgccgcagccgccccaactacctcc
accgacctcgtatacatccccacttattccaggtggttttcttttaacaacattcacgag
tgtgagcttcggttcctccctgagtttttcgacgggaaatcgccttcaaagaaccctagg
gtttacatgtactacaggaattccatcgttaggaaattcagagaaaacccgactacgaag
atcaccttcacggaggctcgtaagactattatcggagacgtgggatcggttcggaggata
tttgatttcttggaggcttggggtttggttaattactcaccccctcctgcgtccaagttg
cccctcaagtgggatgataaggagaccaaatctattacagcattgttgcagagcaccgag
cccacaatgaatgtcgctgaatgtatggtgccgaagaagaaattatgcagtggttgcaag
tcagtttgcagcattgcttgctttgcttctgataagtatgatttgactctttgtgcaagg
tgctatgtccgtgggaattaccgggttggtgttagttcttctgatttcagacgagttgag
atcaatgaagagataaagacagattggactgagaaagaaattttgctccttctagaatcc
accatgcagtatggtgatgactggaagaaggttgcagagtatgttggtggtagaagtgag
atggaatgtgtcactcgctttatcaagcttccttttggtgagcaatatttggggccttca
gactcttgcgaggtcagccagaaattatatcaaacaaaggaccagaatgttgctgcatct
ggattgcaaagttctgaaaagtcattcccaaacaaaagaatgcgtcttaacccacttgct
gatgcaagcaatccaattatggctcaggctgcttttttgtcagctttagtgggtgtagag
gttgctgaagtagctgccagtgctgcggtgagagctctagctgagttcggttatggagcc
attaaagaacatcctagacttctttctagtcatggaagacagcaagaacctgatgcttca
tctaacggtgacgccactttgaaaacatcagaaggacttgatatagatgtgcaatctcag
cttgacaaggaggagcaggacttggagagggcaatgtcttccattactgaagtgcagatg
aaggagattcaagataagatttctcgttttgagaagtatgaatcgcaaatggagagggag
tggcaacaactgcagcaaatgaagaacatgatctttgttgataagctcacgcttctttta
gataaaactcgtgcacaaaaagctggaggaagcatgcagcaggatgctaaaacagaatga
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