Rhododendron vialii: 131333012
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Entry
131333012 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131333012
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131333012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131333012
03041 Spliceosome [BR:
rvl03041
]
131333012
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131333012
Spliceosome [BR:
rvl03041
]
Complex B
Other components
Prp19-related factors
131333012
Complex C
131333012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
TPR_14
HAT_PRP39_C
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_N
Mad3_BUB1_I
TPR_2
TPR_19
ARM_TT21_C
Nic96
TAF1_subA
Motif
Other DBs
NCBI-GeneID:
131333012
NCBI-ProteinID:
XP_058223295
LinkDB
All DBs
Position
7a:40374550..40377985
Genome browser
AA seq
762 aa
AA seq
DB search
MSIPQELYPSQDDPSHMEDFIEFLVNSGRWQEAAERLARVLNDDTFYSTKGKTKHRLWLE
LCDLLTQHDMVSGLNADAIIRGAIRKFADDQVGRLWTALAYYYIRRGLFEKARDVFEEGM
TTIATDRDFSVIFNAYSRFEESMLLFKMEGVIVEDEQTEDDDDEDDRFDVAKIKRKLKRF
WLSDDKDVELTKARFEHLLDRRPELANSLLLRQDPHNVEQWHRRVKFFEGNRAKQILTYT
EAVRTVDPMKAVGKPHTLWVAFAKLYYEDHKDVVNARAVFDKAVRVNYKTVDNLASVWCE
WAEIEVRHKNFEGALELMRRATAEPSSAEVKQRSVAADGNEPVQIKLHKSLRLWAFYVDL
EESLGTLESTRAVYERILDLRIATPQIITNYAMLLEEHKFFEDAFKVYERGVKIFKYPHV
KNIWVTYLSKFVKRYGKSKLERARELFEHAVEATPAESVKPLYLRYAKLEEDYGLAKQAM
KVYDRSTKAVPPHEKLSMYEIYIARATEIFGVPRTREIYRQAIESGLPDKDVKTMCMKYA
ELEKSLGEIDRARGVFIYVSRFADPRSDPDVWNKWNEFEVNHGNEDTFREMLRIRRSVSA
SYTQKHFILPEHLMQKDKQPNLNEAILDALKKAGVPEDETAALEKQLLPDASKTATKDSN
RKVVLGFVSAGVESQTEGGLKLAANHENLELPEESDSEDDERIEIAQEDAPSAVFCGLVR
KREECANNDGNGDDGAATEDTDDEAHLGALERIKRQRRGAMI
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattccgcaagagttgtacccaagccaagacgacccctcgcatatggaggatttt
atcgagtttttggtgaattcgggccggtggcaagaggccgcggagaggctagccagggtt
ttgaacgacgacacgttttattcgactaaagggaagactaagcataggctatggcttgag
ttgtgtgacttgcttacgcagcacgacatggtttctgggctgaacgcggatgcaattatt
cggggagcgattaggaagtttgcggatgatcaggtcgggaggctctggaccgcgcttgcg
tattattacatcaggagggggttgtttgagaaagctagggatgtgtttgaggaggggatg
actacgattgcgacagatagggattttagtgtgatcttcaatgcctactcccggtttgaa
gagagtatgcttctttttaagatggaaggagtaatagttgaggatgagcaaactgaggat
gatgatgatgaagatgaccgtttcgatgtggcaaagattaagaggaagctgaagagattt
tggttgtctgatgataaagacgttgaattgacaaaggcccggtttgagcatctattggat
aggaggccagaactggctaacagcctgcttcttcgccaagacccgcataacgtagagcaa
tggcatcggcgagtgaagtttttcgagggtaaccgtgcaaagcagattctgacttacaca
gaggcagttaggacagttgatcccatgaaagccgtcgggaaacctcatacgctgtgggtt
gcttttgccaagttgtattacgaggatcacaaagatgttgtcaatgcaagagcagttttt
gacaaggcagttcgggtcaactacaagactgtcgataatttggctagtgtttggtgcgaa
tgggccgaaatcgaagttcgacataagaactttgaaggggctttggagttgatgaggcgt
gcaacagcggagccttcttcagcggaggtgaaacagagatcagtggcagccgatggcaac
gaaccagtgcagattaagttgcataaatccttgaggctttgggcattctatgttgattta
gaggaaagccttggtaccttagagtctactcgtgcggtttatgaaaggatattggatcta
agaatagccacgcctcaaattataactaactatgcaatgcttttggaggaacacaaattt
tttgaggatgccttcaaggtttatgaaagaggcgtcaagatttttaaatatcctcatgta
aagaacatatgggtcacttatctttccaagtttgttaagagatatgggaaatcgaaactg
gaacgtgcgcgagagctgtttgagcatgctgttgaagcgaccccggctgaatctgtgaaa
ccattgtaccttcgatatgctaaattagaggaggattacggtctagcgaagcaagcaatg
aaggtatatgaccgatctacaaaggcggttccgccccatgagaagttgagcatgtatgag
atctatatagctcgtgccactgagatattcggggttccaagaacaagggaaatatacagg
caagccatagaatctggtctaccggacaaggatgtcaagaccatgtgtatgaaatatgcc
gagctggagaagagccttggagaaatagaccgtgctcgtggggtttttatatatgtgtct
cggtttgcggatccgcgatctgatcctgatgtatggaacaaatggaacgagttcgaggtg
aaccatggtaacgaagacaccttcagagaaatgctaagaattagaaggagtgtttctgca
agctatacccagaaacatttcatccttcccgagcatctgatgcaaaaggataagcagcca
aatctcaacgaagcaatattggacgcactaaaaaaagccggtgttccagaagacgaaacg
gctgctctagagaagcaattgttgcctgatgccagtaaaactgctaccaaagatagtaac
aggaaagtagtactgggctttgtgagtgccggagtggagtcccagaccgaaggaggatta
aaacttgctgcaaatcacgagaatcttgagctgccggaggagagtgactcggaagacgat
gagagaattgagattgcccaagaagatgctccctcggccgttttctgtggtttggttagg
aagcgggaagagtgtgccaataatgatggcaatggagatgatggtgctgctactgaagat
acagatgatgaggcccatcttggcgcgcttgaaagaataaaaagacaaaggcgaggagca
atgatttga
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