Rhododendron vialii: 131333106
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Entry
131333106 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131333106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131333106
03036 Chromosome and associated proteins [BR:
rvl03036
]
131333106
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131333106
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131333106
mRNA degradation factors
5'-3' decay
Decapping complex
131333106
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131333106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Aldedh
Motif
Other DBs
NCBI-GeneID:
131333106
NCBI-ProteinID:
XP_058223430
LinkDB
All DBs
Position
7a:complement(1823041..1832038)
Genome browser
AA seq
490 aa
AA seq
DB search
MNSRGRYPPGLGGGGNGNGRGGNPNFQQRNFQQQQQYVQRGPMQNHQQFQQQHQQQQQQQ
WLRRNQLGGESSVDEVEKTVQSEAVDSSSQDWKQQLRIPAPDTRYRTEDVTATKGNEFED
YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ
DNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVG
TPGRILDLAKKGICVLKDCSMLAMDEADKLLSPEFQPSIEQLIHFLPPNRQILMFSATFP
VTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ
AVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP
PHIDQAIYCQ
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgcgaggacgatatccgcccgggctcggcggcggcggaaacggtaatggccgc
ggtgggaaccctaattttcaacagagaaactttcagcaacaacagcagtacgtgcagagg
ggtccaatgcagaaccatcaacagtttcaacaacagcaccagcaacaacaacagcagcag
tggttgaggaggaaccaattggggggcgagtcgagcgttgacgaagtcgagaagaccgtc
cagtccgaggctgtcgattcgagttcacaagattggaagcaacagttaaggattcctgca
ccggatactagatacaggactgaggatgtgacagccacgaagggaaatgaatttgaagac
tatttcctaaaacgcgagctactgatgggaatatatgagaaggggttcgaaagaccatct
cctattcaagaggaaagtatcccaattgcactaactggaagtgatattcttgcaagggct
aaaaatggaacaggaaaaactgctgccttttgtatacctgccttagaaaagattgatcaa
gataacaacgtcatccaagtcgttatacttgttccgacacgagaattagctttgcaaacg
tcccaagtttgtaaggagcttgggaagcacctgaaaattcaagtaatggttaccactggt
ggaaccagtttaaaagacgatataatgcgtttgtatcaaccagttcatctacttgttgga
actcctggaagaattctagatcttgctaaaaagggtatttgtgttttgaaagattgctcg
atgcttgccatggatgaggctgataaactgttgtctccagagttccaaccttctatagaa
cagctgattcattttctacctccgaatcgtcaaatattgatgttttcagccacttttcct
gttactgttaaggattttaaagatagatatctgcacaagccctacgttattaaccttatg
gacgagcttactctgaagggtattacacagttttatgcttttgttgaggagagacagaaa
gttcactgcttaaacacccttttctctaagcttcaaatcaaccaatcaatcatcttttgc
aattcggtgaatcgagtagaactgctggccaagaaaattacagagctaggctattcttgc
ttctatattcatgccaagatgcttcaagatcatcgcaacagagtattccacgatttccgg
aatggtgcatgcaggaatcttgtctgtacggatctgtttacaagggggatagacattcaa
gcagtcaatgttgtgattaactttgattttcccaagaatgcagaaacttatctgcacagg
gttggtcgatcagggaggtttggacaccttggtctagcagtgaatttgataacttatgag
gatcgtttcaacttgtataggattgagcaagaacttggaactgagataaagcaaattcct
ccacacatagatcaggctatttactgccagtga
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