Rhododendron vialii: 131333206
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Entry
131333206 CDS
T09330
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131333206
Transcription machinery [BR:
rvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
131333206
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-GeneID:
131333206
NCBI-ProteinID:
XP_058223591
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Position
7a:20243051..20252567
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AA seq
529 aa
AA seq
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MRMGFNLNLKLVTPIRSPFLSNAASWSSLYTSRCRDPSYDSGTVPFAFFISWQGENLYND
PPKAHKSSSAQQTAEKEYLEMEGVKILQMTTGENKLQGRKASHFGLLMENLDTLEATFAD
SYVGRLERDILGQLERVGALKLFHSCLSKTLKSPTFFDLSDMSTQLIKQPLINEAVDVHI
GEIVVRSRKKEERKSRRGRGSPKASMLALPSKSIQKDSQSKLPSNSRSRRLSIARNEAEM
SRQFKLVDDLERLKTALEEETGRVASLSSWAEAARMDKKILLQHLRSGWYCKDALLRSAH
SLVLYLARNYRGFGLAFEDIIQAGKFGLLQGAMRFDHTRGYKFSTYVQYWIRRSMSRFVE
QHSRGIRIPASLSKSMNQIKKARNFLYRTHGRYPDDDEIAKFTGLSLANIQSARQCFRVV
GSIDERLGDSFGAKFMEFTPDTSVESTEEFVVRQQMVKEIHDLLKTLDLTERQVLVMRFG
LCGHHRKSLQEIGTCFQVSKEWIRRVELKALRKLRDEGTHRNLSHYLQL
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatgggtttcaacttaaatctcaaattggttactccaattcgctccccttttctc
tccaatgcagcatcttggtcttccttatacacatctagatgcagggacccttcatatgac
tccgggacggtgccttttgccttttttatttcctggcaaggtgaaaatctgtacaatgat
cctccgaaagcacacaaatcttcatcagctcaacagactgcagaaaaagagtacttagaa
atggaaggagtaaagatccttcagatgactactggagagaacaagttacaaggaagaaag
gcatcccattttggcttattaatggaaaatcttgatacgttggaggcaacgttcgctgac
tcatatgtgggaaggttggaaagagatattttaggacaactggaaagggttggagctctt
aaattattccatagctgtctatcgaagacccttaaatccccaaccttttttgacttgtct
gacatgtcaactcagcttattaaacagcctttgattaatgaagctgtggatgtccacatt
ggtgagattgttgttcgctcaaggaagaaagaagaaagaaaatcaagaagagggagaggt
tcaccaaaagcttcgatgctggcattgccctcaaaatcaattcaaaaggactctcaatca
aaattgccatcaaattctagaagtagaagactatcaattgctaggaatgaggctgaaatg
tcgagacaatttaagttggttgatgacttggaaagacttaaaactgcgttggaagaagaa
actggacgagtagctagcttgagtagctgggcggaagctgccagaatggacaagaagata
ttacttcagcatttgcgttccggttggtattgtaaggacgcgctgctgagaagtgcacac
tccctagttctgtaccttgcgagaaactacaggggatttggcttggcctttgaagatata
attcaggcagggaaatttggtttgttgcaaggtgcaatgaggtttgaccacacaagggga
tacaaattctcaacttatgttcagtactggataaggaggtcaatgtcaagatttgtagaa
cagcattctagggggattcgaattccggcctctttgagcaagtcgatgaatcagataaag
aaagctcggaatttcctatacagaacccatgggagatacccagacgatgatgaaattgca
aagttcacaggcttgtccctagctaatatacaatcagccaggcagtgctttagagttgtg
ggttcaattgatgagagactgggggattcttttggagctaaatttatggagtttacacca
gacacatcagtagagagcactgaagaatttgtagtgaggcagcaaatggtaaaagaaata
catgacctcctgaaaacccttgatctgacagagaggcaagtgttggtcatgagatttggg
ctttgtggccaccaccgcaagtcacttcaggagattgggacgtgtttccaagtaagcaaa
gagtggatacgtagggtagagctaaaagctctgagaaaactaagggatgaaggaacccat
agaaatttgagccattatttgcaactgtag
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