Rhododendron vialii: 131333528
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Entry
131333528 CDS
T09330
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03013
Nucleocytoplasmic transport
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131333528
03015 mRNA surveillance pathway
131333528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131333528
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131333528
5.6.2.5 RNA 5'-3' helicase
131333528
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131333528
mRNA cycle factors
Common to processing body (P body) and stress granule
131333528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
nSTAND3
UvrD-helicase
AAA_16
ATPase
PhoH
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
131333528
NCBI-ProteinID:
XP_058224071
LinkDB
All DBs
Position
7a:complement(14388224..14408004)
Genome browser
AA seq
1279 aa
AA seq
DB search
MDSHGNNLYDTASQPDSATDAYTFLEFNTQGGVGDDDDVAFSYPEFQELSQPIRSAAWPT
PSDSVSVSDSAAAERTDRASSSGHQSDASPVSAASGGGGAGVKGRSHNQAAAVDALAAGM
SGLNFEETGGDDEGFEYGKGGYAEHACRYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGS
HIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCL
SVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPD
ATLEDLEKPGVDDEPQPVVLKYDDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWD
IGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAVHPAWQSVGHVIKLTAQEEVALEL
RVSQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMV
RNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQG
QVLVCAPSNVAVDQLAEKISATGLKVVRLSAKSREAVSSPVEHLTLHYQVRHLDTSEKSE
LHKLQLLKDEQGELSSSDEKKYKSLKRATEREISQSADVICCTCVGAGDPRLANFRFRQV
LIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGV
KPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQTSGIDFPWPVPNRPMFFYVQMG
QEEISASGTSYLNRTEAANVEKLVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL
RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL
GNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRFFFGGGPGI
VPDAFGSVASSSPNSDRRNSHSRGSYMPPGPPNGTHKPGLHPAGYSMPRVPVPTYHGVPP
SQPYAIPTRGAVHGPVGGPHAPQPGQRGFGAGRGNAGAPIGSHLPHQQGSQQPIGSLGSS
FNFPLENSNSQPSVGTPLSQPGFVSNMSLHGQGQTFRDSFSMGGMSQDFLSDDFKSQGSH
VPYNVADFSTQASQNGYAVDYVNTQGAQAGFPGSFLNQNSQAGYSRFGTGNDFMSQDYMA
HGSQGLFTQVGFGDPSQDDASQRHFGLPNANQLQSQGLMNPLYSQPFAHYNTQPMNLQAT
QQQSQQGQSSQNQKLHYNG
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggattctcacggtaacaacctctacgacacagcctcgcagcccgactcggcaaccgac
gcctacaccttcctcgaattcaacacccagggcggagtcggcgacgacgacgacgtcgcc
ttctcctaccccgaattccaagagctctcccagccaatccgctccgctgcctggcccacg
ccctccgattccgtgtcagtatccgattccgccgcagccgagagaacggaccgggcctcc
tcctctggccaccagtccgacgcctccccggtctccgccgcgtccggaggcggcggcgct
ggggtgaaggggaggagtcataaccaggcggccgcggtggacgcgctggcggcggggatg
agcgggttgaattttgaagagactggtggggatgacgagggttttgagtacgggaagggc
ggttacgcggagcacgcgtgcaggtactgcggggtgacgaacccggcgtgcgtggtgagg
tgtaacgtgccgtcgtgccggaagtggttctgcaattcccgggggaacacttcgggctcg
cacatagtgaaccatctggttcgagccaagcacaaagaagtttgtcttcataaagatagt
cccctgggagaaacgatccttgaatgttacaattgtggatgccgaaacgttttccttctg
ggatttatatctgccaagacagagagtgttgtcgttcttctgtgcagggaaccttgtctt
agtgtcaatgcattgaaggacatgaattgggacctgagtcagtggtgtccactcattgat
gataggtgttttctgcagtggcttgttaaggtcccatctgaacaggaacagttgagggcg
cgccaaatcagtgcccaacaaataaataaggttgaagaactatggaagaccaatcctgat
gctaccctggaagatcttgagaagcctggtgtggatgatgaacctcagcctgttgtcttg
aaatatgatgatgcttatcagtatcaaaatgtttttgcgccacttatcaagcttgaagct
gattacgataagatgatgaaagaatctcaaagcaaagacaacctcacaatacggtgggat
attggtctcaacaagaagcgtgttgcatattttgtttttccaaaggaagataatgagttg
cgtcttgtacctggtgatgagttgcggctacgttattcaggagatgcagttcatccggct
tggcagtcagtggggcatgtgataaaattaaccgcacaagaggaggttgcccttgagctg
cgggtcagtcagggagttcctgttgatgtgaaccatggttttagtgttgatttcgtgtgg
aagagcacaagttttgatcggatgcagggggcaatgaaaacttttgcagtggatgaaaca
agtgttagtgggtacatttatcaccacttgttgggccatgaagttgaggttcagatggtc
cgtaatacgttgcctcggcgatttggtgcacccggcctaccagagcttaatgcatctcaa
gtttttgctgtaaaaagcgtccttcagaagccaattagtttaattcaaggtccgcctggc
actggaaaaactgtgacttctgcagcaatcgtatatcatatggccaaacaaggccagggg
caggttttggtttgtgctccaagtaacgtggctgttgaccagctagctgaaaagatcagt
gcaaccggattgaaggttgttaggttatctgcaaagtcaagggaagctgtaagttctcct
gttgagcatttaacccttcactatcaggttcggcatcttgacacatctgagaagagtgag
cttcacaagttacagttactgaaagatgaacaaggagaattatccagcagtgatgagaag
aagtataaatctctgaagcgagcaacagagagggagatatctcaaagtgccgatgtcatt
tgttgcacttgtgttggtgctggcgatcctcgattggctaattttagatttcgtcaggtc
cttattgatgaatctactcaagcaactgagccggagtgtcttattcccttggttcttgga
gtgaagcaggttgttctcgttggtgaccattgccagcttggtccagtcataatgtgcaaa
aaagcggctcgtgctggactagcccagtctctatttgagcgccttgtgctacttggtgtc
aaaccaattagattgcaggttcaataccgtatgcatccagccctttcagaatttccttct
aatagcttctatgaaggcactcttcagaatggagtgaccatcaatgaaagacaaacatca
ggcattgatttcccttggcctgtgccaaaccgtccaatgttcttttatgttcagatggga
caagaggagataagtgccagcggaacatcctatcttaaccgtacagaggctgcaaatgtt
gaaaagcttgtgactacgtttttaaggagcggtgtagttcctagtcagattggggttatt
acaccttatgaaggacaacgagcatatattgtaaactatatgtccagaaatggtgctctc
agacagcaactttacaaggaaattgaggttgccagtgtagattcattccaaggaagggag
aaagattacattattttgtcctgtgtaagaagcaatgaacatcagggtattggattcctt
aatgatcctcgaaggctcaatgttgcactcactcgagcccgttatggtattgtcatattg
gggaaccctaaagttctaagcaaacagccactgtggaatggtttattgacgcactacaag
gaacacgagtgcttggtggaagggcctctaaataacttgaagcagagtatggttcagttt
caaaagcccaaaaagatctacaatgaccgcagatttttctttggtggtggacctggaatc
gttcctgatgcttttgggtcggttgcctcatcaagtcctaattcagataggagaaacagc
cattctaggggttcttatatgccgcctggcccacccaatggtacccacaaacctgggtta
catcctgctggttattcaatgcctcgggtgcctgttccaacatatcacggtgtcccccct
tcacaaccgtatgctattccaactcgtggggctgttcatggacctgttggaggtccgcat
gcccctcaacccggacaacggggttttggtgcaggccgtggcaatgccggtgctcctatt
ggaagtcatcttccacaccaacaaggctcccagcaacctataggaagccttgggtcctct
ttcaactttcctctggagaattcaaatagccagccatctgttggcacaccgttgtctcag
cctggatttgtttccaatatgtcacttcatggacaaggccaaacatttcgtgacagtttc
tctatggggggcatgtctcaggacttcttgagtgatgatttcaaaagccagggttcacat
gttccatacaatgttgcagacttctccacacaggcttctcagaatggatatgctgttgat
tatgtaaatacacagggagcgcaagctggtttcccaggaagctttttgaaccagaattct
caggctgggtattcccgctttggtaccggaaatgatttcatgtctcaggattacatggct
catgggtctcaaggtctttttacacaggttggattcggtgatccatcccaagatgatgct
tcccagcgccactttggcctgcccaatgccaaccaattgcagtcgcagggtttgatgaat
cctctctactcccaacccttcgcccactacaatacacagccaatgaacttgcaagctaca
cagcagcagtcacagcagggccagagctcccaaaatcagaaacttcattacaacggttga
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