Rhododendron vialii: 131333637
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Entry
131333637 CDS
T09330
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
rvl
Rhododendron vialii
Pathway
rvl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131333637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131333637
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
131333637
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_C
Ku_N
VWA_2
DUF7515
Motif
Other DBs
NCBI-GeneID:
131333637
NCBI-ProteinID:
XP_058224242
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Position
7a:2928798..2935761
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AA seq
700 aa
AA seq
DB search
MARNKEALVLLLDVSPSMHNILQEVEKVCSMLVQKKLIYSKYDEVGVVLFGTEDTNNDLT
TEVGGYEHVNVLQQIRVVDKDIVEALQQLPRGTVSGDFLDAIVVGMDMLIKKFGPTNKGK
KRLCLVTKAHCPVKAPYEGTEEDQVNTISAQMLAQGIKMDCIVPRGKQTVDGNGGVMEEN
DHLLGVFSKKSSSKVVYVESPTSLLGALRTRRISPVTIYRGDLEISSALKIKVWVYKKTA
EEKFPTLKKYSDKAPPTDKFATHEIKVDYEYKSVEEPSRIVPPEQRIKGYRYGPQVVPIS
SAEWDAVKFKPEKSVKLLGFTDVSNIMRHYYMKDVSIFIADPGNKKAILSVSALARAMKE
MKKVAILRCVWRQGQGNVVVGVLTPNVSDKDNTPDSFYFNVLPFAEDVREFQLPSFSNFP
MSRQPNEEQQEAADNLVKMFDLAPTGKEEALQPDFTPNPVLERFYRHLELKSKHPDAPVP
PLDDTLKKITQPDPEILSECKSVVDEFRRLFELKENPKLKKSAKRLLRDKPSRSDEEGEG
SGNANDVGAVKYIENKSAGNIDKIGDLTPVQDFEAMMSRRDSPEWVNKAIKDMKNKIFDM
VENSCEGDTYQKALECLVSLRKGCILEQEPKQFNEFLRHLYKFCQEKDLNNFCEFLASKG
VSLITKTEAVDSEVTDDEARSFTVKKEPKHEEERGVNSLL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaataaggaagcattggttttgttacttgatgttagcccatcgatgcataat
attttgcaagaagttgaaaaagtctgctccatgctagttcaaaagaagttgatttacagc
aaatatgatgaagtaggagttgttttatttggaactgaagatacgaacaatgacctgaca
acggaagtgggtggatatgaacatgtgaatgtgttgcagcagattagagttgttgataaa
gatatcgttgaagctttacagcagcttcctcgaggaactgtttctggtgattttcttgat
gccattgtggtggggatggatatgctgataaaaaaatttggaccaacaaacaagggcaag
aaacgcctttgccttgttacaaaggcacattgtcctgttaaagctccgtatgaaggaaca
gaggaggatcaagtcaacaccatttctgctcagatgcttgcacagggtatcaaaatggat
tgtatagttccaaggggaaagcaaactgtggatggaaatgggggagtgatggaagagaat
gatcatctgctgggtgtattttctaagaaaagttcttcgaaggtagtttatgtggagagt
ccaacttcattattaggtgcacttagaactcggagaatttctcctgtcacaatatacaga
ggtgaccttgaaataagctcagcattgaagatcaaggtatgggtttacaagaaaacagct
gaagagaagtttcccactctcaaaaagtattctgataaagcgcctccaacagataagttt
gctactcacgaaatcaaggtagattatgagtataaaagtgttgaagaacctagtagaatt
gttcctcctgaacaaagaattaaaggttatcggtatggaccacaagtagttcctatttcg
tctgccgaatgggatgcagtaaagttcaaaccagagaagagtgtgaagcttctgggtttt
acagatgtgtctaacataatgcggcactattacatgaaagacgtctccatcttcattgcc
gatccgggtaataaaaaggccattctctcagtttctgccttagctagagctatgaaggaa
atgaagaaggtagcaattctccgttgtgtttggagacagggtcaagggaatgtcgttgtt
ggggtacttacccctaatgtatcggacaaagacaatactccggattcattttacttcaat
gttcttccttttgctgaggatgtccgagagttccagttaccctcattcagtaacttccct
atgtcacggcagccaaatgaagaacaacaggaggcagcagataacctggtaaaaatgttt
gatcttgccccaactggcaaagaagaagctctgcagccggatttcacaccgaatcccgtt
ctggagcgtttttatcgccatcttgaattgaaatcaaagcaccctgatgcacctgtgcct
ccacttgacgatactctcaagaagataacacaacctgatccagaaattctttctgagtgc
aaatctgttgttgatgaatttcgtaggctttttgaactcaaggaaaatcccaagctgaag
aagtctgcaaagcggttactcagggataaaccttctcgatcagatgaggaaggagagggt
tctgggaatgctaatgatgttggagcagtgaagtacatagaaaataaatcggcaggcaat
attgataaaattggggacttgactcctgttcaagattttgaagctatgatgtctcgaaga
gatagcccagagtgggttaataaagcaattaaggacatgaaaaataaaatttttgacatg
gtggagaactcttgtgaaggggatacctatcagaaggcactggaatgtttagtatccctc
cgcaagggttgtatccttgagcaagaacccaaacagttcaacgaatttttgcgtcatctt
tataaattctgccaagagaaagaccttaacaacttctgtgagttccttgcgtccaaaggg
gtctctttgatcacaaagactgaagctgtagacagcgaagttacagacgatgaggctagg
agctttacggttaaaaaagagccaaaacatgaggaagaacgaggagtgaatagcttgctt
taa
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