KEGG   Rhododendron vialii: 131333906
Entry
131333906         CDS       T09330                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
rvl  Rhododendron vialii
Pathway
rvl03030  DNA replication
rvl03410  Base excision repair
rvl03420  Nucleotide excision repair
rvl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131333906
   03410 Base excision repair
    131333906
   03420 Nucleotide excision repair
    131333906
   03430 Mismatch repair
    131333906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rvl03032]
    131333906
   03036 Chromosome and associated proteins [BR:rvl03036]
    131333906
   03400 DNA repair and recombination proteins [BR:rvl03400]
    131333906
DNA replication proteins [BR:rvl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131333906
  DNA Replication Termination Factors
   ELG1-RFC complex
    131333906
Chromosome and associated proteins [BR:rvl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131333906
DNA repair and recombination proteins [BR:rvl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131333906
  Check point factors
   HRAD17(Rad24)-RFC complex
    131333906
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 nSTAND_NTPase5 AAA_lid_RFC1 AAA_16 Mg_chelatase Rad17 Viral_helicase1 RuvB_N nSTAND3 AAA_11 RCF1-5-like_lid AAA_5 DNAX_ATPase_lid AAA_19 AAA_assoc_2 AAA_24 AAA_28 AAA_25 ABC_tran bpMoxR AAA_30 IstB_IS21 NTPase_1 RNA_helicase AAA_3 AAA_18 MeaB NPHP3_N AAA_7 AAA_29 DO-GTPase1
Other DBs
NCBI-GeneID: 131333906
NCBI-ProteinID: XP_058224698
LinkDB
Position
7a:10973661..10978004
AA seq 333 aa
MASSSSSSATQAYEIPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG
KTTSILALAHELLGPNFKEGVLELNASDERGIDVVRNKVKMFAQKKVTLPPGRHKVIILD
EADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILSR
LMVVLEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPL
FVKNIVRNVLEGKFDDSCAGLKQLYDLGYSPTDIITTLFRIIKNYEMAEYLKLEFMKETG
FAHMRICDGVGSYLQLCGLLAKLALVRETAKAS
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcgtcttcttcttcgtcatcagcgacccaggcgtacgagataccgtgggtagagaag
tacagaccctccaaagtggccgacatcgtcggcaacgaggacgccgtgtccaggctccaa
gtcatcgctcgcgacggcaacatgcctaacctcatcttatctggtcctcctggaactggt
aaaaccactagtattttagctctcgcacatgagctcctgggaccaaattttaaggaggga
gttttagagctgaatgcatcagatgagaggggaattgatgttgtgagaaacaaagttaag
atgtttgcccaaaagaaagttacgctaccccctgggaggcacaaagtaatcatattggat
gaagctgacagcatgacatcaggagctcagcaagccttgaggaggacaatggaaatatat
tccaattccacacgttttgctcttgcctgcaatacatcctcaaaaattatcgagcctatc
caaagtagatgtgcacttgttagattttcaagattatccgatcaagagattctcagccgt
ctcatggtggtccttgaagcagaaaaggttccttatgttccggaaggccttgaagcaatt
attttcactgctgatggtgatatgaggcaggcattgaataacttgcaagctacatacagt
ggattccggtttgtcaaccaagaaaatgttttcaaggtttgcgaccagcctcatccgttg
tttgtgaagaatattgtgcgtaatgtactagagggaaaatttgatgattcttgtgctggt
ctaaagcagctttatgatttgggctactcccccactgatataatcacaacccttttccgg
attatcaagaactatgagatggctgagtatctgaagttggagttcatgaaggaaactgga
tttgcacacatgagaatctgtgatggagtaggttcatatcttcagctgtgtggcttgctg
gctaagcttgcactagtgcgggaaaccgcaaaagcatcataa

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