Rhododendron vialii: 131334452
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Entry
131334452 CDS
T09330
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03008
Ribosome biogenesis in eukaryotes
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131334452
09123 Folding, sorting and degradation
03018 RNA degradation
131334452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131334452
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131334452
03009 Ribosome biogenesis [BR:
rvl03009
]
131334452
03016 Transfer RNA biogenesis [BR:
rvl03016
]
131334452
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131334452
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
131334452
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
RNases
131334452
Transfer RNA biogenesis [BR:
rvl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
131334452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
131334452
NCBI-ProteinID:
XP_058225451
LinkDB
All DBs
Position
7a:40801788..40817330
Genome browser
AA seq
1064 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVIEEEAVVIDGIKIPVDTSKPNPNNLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEELLREEFEREGRKLPPKVESQTCDSNVITPGTQFMGVLSIALQYYIHL
RLNNDPGWKSTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEIHFSILREVVFTPGQQGKCFLCGQMGHLAADCEGKAKRKAGEFDEKGDADVVAKK
PYQFLNIWTLREYLEYEMRIPNLPFEMDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKELRSLGGYLTDGSQPNISRVEHFIQAVGSYEDKIFQKRARLHQRQAERIK
RDKAQSKRGDDAEPQVKPESLVPVTRFHGSRLASGPSHSPYQQKGSESRARKGARSSSGA
SVGAAIVEAENSLETEICENKEELKTKLKEVLREKSDAFNSENPEEDKVKLGEPGWKERY
YEEKFSAQTAEELDCIRKDVVLRYTEGLCWVMRYYYEGVCSWQWFYPYHYAPFASDLKDL
DQLDISFELGSPFKPFNQLLGVFPAASSHALPEHYRRLMTDPNSPLIDFYPSDFEVDMNG
KRYAWQGIAKLPFIDEARLLAEVARLEHTLTEEEVRRNSIMFDMLFVALSHPLSPYIFSL
NDRCKQLTDKERAEIKEQLDSRARATCSGGMNGYISLCAGDPCPPIFRSPVFEMEDIMDN
QVICAIYILPDAHKHITRPPAGVVFPKKIVAIEDLKPEPTLWHEDSGRKPWENRRQDPPG
NISGRQLGDAAHRLVVNSLQVRAGPNGYSDQMHRTPHPPIATYGPHSSPYQNNRYQDQER
NNMRSSNVGMVRNHFDHGYSQPYASAAVHDPYSRSHHERDHYDRSYPRNESNHQSTTQSR
EYNPNRGYYPPGFQQNGGNRYPAPPRHGVQTPIPGGAHFPQQGGYNNYQSYRAATYHDPS
AGWAPRAENGAGRGYSRPQQLGNQFSALSRGVSRQPPPPPGYRR
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttctaccggtggctggcggagaagtacccgatggtggtagtggac
gtgatcgaggaagaagccgtcgtgatcgacgggatcaagattccggtcgacacgagcaaa
cccaaccctaacaacctcgaattcgacaacctgtatctcgacatgaacggcatcatccac
ccctgttttcaccccgaggaccggccttctcctaccacttttgacgaggtgttccagtgc
atgtttgattacatagatcgactttttgtgatggtgcgaccacgaaagttactgtacatg
gctattgatggtgttgctccgagggcaaaaatgaatcagcagcggtcgagacggtttaga
gctgctaaagatgcagcagatgcagcagctgaagaagagctgttgcgcgaggagtttgag
agggaaggcagaaagcttcccccaaaggtggaatcacaaacttgtgattcgaatgttatc
acaccaggaactcaatttatgggtgttctctcaatagctttgcagtactacatccatctg
agacttaacaatgatcctggatggaaatctaccaaggtcatactttctgatgccaatgtc
cccggtgaaggggaacataaaattatgtcgtatattcgtcttcagagaaatcttcctggt
tttgatccaaacacacgccattgcttgtatggcttggatgcagatttaatcatgttggct
ttggccacccatgaaatccatttctcaattctcagggaggttgtgttcacccctggacaa
caaggcaaatgcttcttatgtggtcaaatgggtcatttggcagctgattgtgaaggtaag
gcaaagagaaaggctggggagtttgatgagaaaggtgatgccgatgttgtggccaaaaaa
ccttaccagtttctcaacatttggactcttagagagtatttggaatacgaaatgaggatt
cctaatctgcctttcgagatggatttggagtgcattgtcgatgacttcatcttcatgtgc
ttttttgttggcaacgattttttaccacatatgcccactttggagatccgtgagggtgca
attaatttgcttatggcggtatataaaaaggaattgaggtcgttgggaggatatttgact
gacggaagccagccaaatattagcagggtggagcatttcattcaggctgtgggatcatac
gaggacaaaatattccagaaaagggctcgattgcatcagaggcaagctgaaagaatcaag
cgtgataaggcacaatcaaaaagaggagatgatgcagaacctcaagttaaaccggagtct
cttgtaccagtcactcgttttcatggttctcgccttgcttcaggtccttcacactcaccg
tatcagcagaagggttccgagtccagggctagaaaaggtgcacgctcgtcctctggggcg
tctgttggtgctgctattgttgaagcagagaatagtcttgagacagagatttgtgaaaac
aaagaagaattgaagacaaagctaaaggaggtacttcgtgagaagtctgatgctttcaac
tctgaaaaccctgaggaagacaaggtcaaattgggggagccaggttggaaggagaggtat
tatgaagagaagttttcagcacaaactgcggaggaacttgactgcatacgaaaagatgtc
gttttgaggtacacagaaggcttgtgttgggtaatgcgctattactatgaaggggtttgt
tcgtggcagtggttttatccttaccattacgcaccatttgcttctgatctcaaggatctg
gaccagttggatataagctttgaactaggttccccattcaagccattcaatcagttattg
ggggtcttcccagctgcaagctctcatgcacttcctgagcactataggagactgatgact
gatccaaactcacctcttattgatttttatccaagtgattttgaagtggacatgaatggc
aagaggtatgcttggcagggtattgccaaattgccttttattgatgaagcccgccttctt
gctgaggtcgcaagacttgagcatactttgacggaggaagaagtgcgaagaaatagcatt
atgtttgacatgctttttgtggcgctctctcatcctttatctccctacatattctctctt
aatgatcgttgtaaacagttgacagacaaagaacgagctgaaattaaagagcaactagat
tcaagggcaagggctacatgcagtggtggaatgaatggttatatatcgctttgtgctgga
gatccttgccccccaattttcaggtcaccagtttttgaaatggaagatattatggacaat
caagtcatatgtgctatatacatacttccagatgctcacaaacatattactcggccacca
gcaggggttgtattcccaaagaagattgttgcgatagaggacctcaaacctgagcctact
ttgtggcacgaggattccgggaggaagccatgggaaaacagaaggcaagatccacctgga
aacatttctggccggcagctcggtgatgctgctcatagacttgtggttaatagcttacaa
gtaagggcaggtccgaatggttacagcgatcagatgcatcgcacaccccatccccccatt
gccacatatggcccacactcatccccctaccaaaataatagataccaggatcaagaacgc
aacaacatgcgttcatctaatgttggaatggtacgaaatcactttgatcatggttacagt
caaccatatgcttcagcggctgttcatgatccctacagtaggtcccaccatgagagggat
cattacgatagatcatacccgcgcaacgaaagtaaccaccaatctactacacaaagtaga
gagtataatccaaatcgtggatactacccgcctggattccaacaaaatggtggaaacagg
tatcctgccccacctcgtcacggggtccaaactcccattcctggtggggcccattttccg
caacagggtggatataacaactaccaatcgtacagagctgccacctatcatgatcccagt
gctggttgggctccacgagcggagaacggtgcggggagagggtatagtcgtccgcaacaa
ttaggtaatcaattttcagcattaagcaggggagtaagtagacagccgccaccaccgcca
ggttatcgtcgctag
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