Rhododendron vialii: 131335200
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Entry
131335200 CDS
T09330
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rvl
Rhododendron vialii
Pathway
rvl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131335200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131335200
03036 Chromosome and associated proteins [BR:
rvl03036
]
131335200
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131335200
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131335200
PBAF complex
131335200
GBAF(ncBAF) complex
131335200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
131335200
NCBI-ProteinID:
XP_058226441
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All DBs
Position
8a:complement(30240729..30245742)
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AA seq
577 aa
AA seq
DB search
MESSSHPPQQDPFSLKPPLPADVDLYTIPSNSSWFSWNDIHDTERLHLREFFDGASITRT
PKIYRDYRDFIISKYREDPSRRLSFTEVRKSLVGDVCLLRKVFLFLDKWGLINFGAPSAA
AAAAAEGDLGRLKVRVEEGAPSGVRVVAGPNSLKPVGVPVPGPGGVGGDKGGGEVVGNGF
KVLPPLASYRDVFSEENGGFCRGCKERCENGHYECAKEGSFIICVKCFKNGNYGENKSAG
DFKFIDCIQNSGNHEAAWTEAETLLLLESVLKHGDDWDLVAENVKTKTKADCISKLIQLP
FGDLMLGSAHRNGRLWENDGNLSVVKQGQVASSESHSEENVKREDQCEDVKNESNQNGDA
ENQVPPLKRKRTTPPSDTGNSLIQQVALLSSTVDPHITASAAEAAVTALCDEYQCTREIF
DDDDNEIEELGSSPQNNKKERVLQVDGPEMEGNPTESDSQGTSTVKNAIPLTFQMRAATA
TALGAAAARAKLLADQEDREIECLVATIIETQMKKLQRKIKHFDELELIMEKEHTQLEDL
KESLIAEHMNVLQRVFSSGISKWRDNTSVKPQLDIVL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggagtcctcctcacatcctccacaacaagaccccttcagtttaaaacccccacttccc
gccgacgtcgatctctacaccatcccttctaactccagttggttctcctggaacgatatc
cacgacacagagaggctccacctccgcgaattcttcgacggggcctcaatcacgcgaacc
cccaaaatctacagggactacagggacttcatcatctccaagtacagagaagatccttcc
aggaggctcagcttcaccgaggtgcgtaagtcgctcgtcggcgacgtctgtttgctgaga
aaggtgttcttgtttctggacaaatggggtttgatcaatttcggtgcaccgtccgccgcc
gccgcagcggcggccgagggtgatttggggaggttgaaggttagggttgaggaaggggct
ccgagcggggtccgggtcgtggcgggtccgaattcgttgaagccggttggtgtgccggtg
ccggggcctgggggagtgggtggtgataagggtggtggggaagtagtgggtaatgggttt
aaagtgttgcctccattggcttcttatagagatgtttttagtgaggagaatgggggattt
tgtaggggttgcaaagaaaggtgtgagaatggacattatgaatgcgcaaaggaaggaagc
ttcatcatttgtgtcaagtgcttcaagaatggaaattacggggagaacaagtctgcgggt
gatttcaaattcattgactgcattcaaaacagtggaaatcatgaagctgcttggactgaa
gctgaaactctacttctcttagaatctgtcttgaagcacggagatgactgggatctcgtc
gctgaaaatgttaaaactaagactaaagcagattgtatttcgaagctgatacaactgcct
tttggggaccttatgttgggatctgcccacagaaatggtaggttgtgggagaatgatggt
aacttgagcgttgtcaaacaaggacaagtagcttcatccgagtctcattctgaagagaat
gtcaaaagagaggatcaatgcgaggatgttaaaaatgagagcaaccagaatggagatgct
gagaaccaagttcctccattaaagagaaaacgcactacaccaccttctgatacaggcaat
tcactgatacaacaggtagctctcttatcttcgacggttgacccacatatcacagcttct
gctgctgaggctgctgttacggcactctgtgatgagtatcaatgtacaagagagatattt
gacgatgatgataatgaaattgaggaattgggatcttctccccagaataacaagaaagag
agagtccttcaggttgatggtccagagatggagggaaaccccactgaatcagattctcag
ggaacatccactgtaaagaatgctatacctctgacttttcaaatgagagctgcaacagca
acagctcttggtgctgctgctgctcgtgccaagctattggcagatcaagaagacagggaa
atagagtgtttagttgcaaccattattgaaacacagatgaagaagttacaacgtaaaatc
aagcattttgatgagctggagctgataatggagaaggaacatactcaactggaggacctg
aaagagtctctcatagcagaacatatgaatgttttacaaagggtattcagttctgggata
tctaaatggagggataatacttctgtaaaacctcagttggatattgtactttga
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