Rhododendron vialii: 131335402
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Entry
131335402 CDS
T09330
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131335402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131335402
Spliceosome [BR:
rvl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131335402
Complex C
U5 SnRNP specific factors
131335402
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
131335402
NCBI-ProteinID:
XP_058226712
LinkDB
All DBs
Position
8a:32123498..32137088
Genome browser
AA seq
2348 aa
AA seq
DB search
MWNNSGQIAPPGTGGSSIPPPPAAQPSYTVLPSPAEMEARLEEKARKWMQLNAKRYGDKR
KFGFVEAQKEPIPPEHVRKINKDHGDMTSKKFRHDKRVYLGALKFVPHAVYKLLENMPMP
WEQVREVKVLYHTTGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPF
DDEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVRTRLINGPSYRKWHL
SLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGD
EDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLSVYHTPMIMFIKTEDPDLPAF
YYDPLIHPITTTGKDRREKKINEEEEEEDFYLPDGVEPLLKDTPIYTDTTAAGVSLLFAP
RPFNMRSGRMRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCFVLNELHHRPPKAQK
KKHLFRSLAATKFFQITELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVK
TLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQL
TGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLL
ERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKART
ILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVD
KTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFP
PLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQ
RAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPP
PLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKMDLTMLNRLLRLVLDHNIADY
VTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMP
NEFITFWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGY
NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFS
MCGFEVRILPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQI
LMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPN
LYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIE
TVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLR
WGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLA
QAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAA
LVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLIL
KATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHI
WPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIA
EIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRV
NHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGVSPPDNPQVKEIRCIAM
PPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWE
GERCIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRF
LGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHYLEFSNLEEGETAE
GDREDTFT
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacagcgggcagattgcgccgcccgggaccggcggctcgtcgatcccgccg
cctccagcggcgcagccttcgtacaccgtcctgccgtccccggcggagatggaggctcgc
ttggaagagaaagcgaggaagtggatgcaactgaatgcgaaacggtacggcgacaagcgg
aagtttggattcgtcgaggcgcagaaggagccgatacctcctgagcatgtcaggaagatc
aacaaggatcatggtgacatgacatcaaaaaagtttcgtcacgataaacgtgtttatctc
ggagcccttaaatttgttccacatgcagtttacaagctccttgagaacatgccaatgcct
tgggaacaggtccgtgaagtgaaggttttataccatactactggtgctatcacatttgtg
aatgaaataccatgggttgttgaacccatttatttagctcagtggggttccatgtggatc
atgatgcgaagagaaaagagggataggcggcatttcaagagaatgcgatttcctcctttt
gatgatgaggagcctccattggattacgccgataatctgttggatgtagatccgttggag
cctattcaattagaaatggacgaggaagaagattcggctgtatatacttggttctatgac
cataaacctcttgtaagaacaaggcttatcaatggtccaagttaccggaaatggcatctc
tcccttcctatcatggcaacacttcatcggctggccgggcaactgctttctgatttgatt
gaccggaattatttttacttgtttgacatggagtctttttttaccgccaaggctctgaac
atgtgcatacctggtggtcctaaattcgagcctttgtatcgtgacatggagaaaggtgat
gaagactggaatgagtttaatgacatcaacaaacttatcattcggtcacctctcaggaca
gagtatagaattgcattccctcacctttataacaataggccaaggaaagttaagctcagt
gtgtatcacactcctatgattatgttcattaaaactgaggatcctgatctacctgcattt
tattatgacccactcatacaccccataacaaccaccggtaaggaccgacgtgagaagaaa
attaatgaagaggaggaggaagaagatttttatttgcctgatggggttgaacctctgcta
aaagatacgccaatatatacagacactacagctgctggtgtctcactattgtttgcccca
cgcccttttaacatgagatctgggcggatgcgacgagctgaagatatacccctcgtgtcc
gagtggttcaaggagcactgtcctccggcttacccagttaaagttcgggtcagctaccag
aaattgttgaaatgttttgttttgaatgagctacatcaccgaccacccaaggctcagaag
aagaaacacttattccgatctctagcggctacaaagtttttccaaattactgaacttgat
tgggccgaggctggtcttcaagtttgtaagcaagggtataacatgctcaatctgttgata
cacaggaagaacttgaattaccttcaccttgattataacttcaacttgaagcctgtgaag
actcttactactaaggaacgaaagaagtcgaggtttggtaatgccttccatctctgtcgt
gagatattgcgtttgacaaagcttgtagttgatgccaacatacagttccgcctgggaaat
gtggatgcgtttcagttggcagatggcttgcaatacacattttcccatgttggccagctg
acagggatgtaccgttacaagtacaggctgatgcgacagattcgaatgtgtaaagatttg
aagcacttgatttactaccgatttaataccgggccggtgggtaaaggacctggatgtgga
ttctgggcaccaatgtggagggtatggttgttctttcttagagggatagtgccactgctg
gaaaggtggttgggaaatttactggcacggcagtttgagggacggcattcaaagggtgtt
gccaagactgttaccaagcaacgtgttgaaagccacttcgaccttgagcttcgtgctgct
gtaatgcatgatgttcttgacgccatgccagagggcattaagcaaaataaggcaagaact
atcttgcaacatctaagtgaagcatggcgctgttggaaagcaaatatcccttggaaggtt
cctgggttgcctgtaccaattgagaacatgatccttcgttatgtcaagtcaaaagctgat
tggtggacgaatgtggctcattataaccgtgaacgtataaggaggggcgcaacagtcgac
aagacagtttgtcgcaagaatctgggaagattgactcgtctttggctgaaggcagaacag
gaacggcagcacaactatttgaaagatggtccatatgtgacaccagaagaagctgtggcc
atttacactactactgtgcattggttggaatctcggaagttctctccgattcccttccct
ccattgtcttacaagcatgatacaaagcttcttatccttgcgctcgagaggttgaaagaa
tcttacagtgtggcagtgagattaaaccagctacagagggaggagttgggtctcattgag
caagcttatgataatccgcatgaagcattatcgcgtattaaacgtcacctgcttacacag
cgtgccttcaaagaggttggcattgagttcatggatttgtacagttacctgattccagtc
tacgagatcgaacctcttgagaaaattaccgatgcatatcttgaccagtacctatggtat
gaaggagacaagcgccatctgttccctaattggattaagcctgcagattcagagccacca
ccattgctggtctataaatggtgccaaggcataaacaatttgcaaggaatatgggacact
agtgatggacagtgtgtggtgatgcttcagactaagtttgagaaattctttgagaaaatg
gatttgacaatgctgaataggctactgcgcctggtccttgatcacaacattgctgattat
gtcactgcaaagaacaatgtcgtgttatcttacaaggatatgagtcacacgaattcatat
gggcttatacgtggacttcagttcgcatcttttgttgtacagtattatggactcgtgctg
gatctcttgcttctgggtttgacacgagccagtgaaattgctggtcctccgcaaatgcca
aatgagttcattactttttgggacaccaaagttgaaacccgacatccaattcggttgtac
tcccggtatattgacaaagtgcatatattgttccgcttcactcatgaagaagcccgcgac
ctcatccaacgatatcttactgaacatcctgatcctaacaatgagaatatggttggttat
aacaataagaagtgttggccaagagatgcgagaatgaggctgatgaagcatgacgtcaat
ctagggaggagtgttttctgggatatgaagaatcgtcttccacgaagtattacaacattg
gaatgggagaacagttttgtttctgtttacagcaaagacaatccgaacttgcttttcagc
atgtgtggatttgaagttcggatactgccaaagataagaatgagtcaagaggcgttcagc
aatacaagagatggtgtttggaatctacagaatgaacaaactaaagaacggactgcagtt
gctttcttacgagttgatgatgagcatatgaaggtgtttgagaatcgtgtgaggcagatt
cttatgtcctctggttcaacaacgttcacaaaaattgtcaacaaatggaatactgctctt
ataggtttgatgacgtacttccgtgaagccaccgtgcacactcaagaactgttagatttg
ttggtcaaatgtgaaaacaaaattcaaacccgtattaagatcggattaaactcgaaaatg
cctagcaggttcccacctgtcattttttatactccaaaggaaattggggggcttggtatg
ttatcaatgggtcacatattgatcccacaaagcgatcttcgttacagtcaacagacagat
gttggtgtaacccattttaggagtggaatgagtcatgaagaggaccagttgattcctaat
ctttatcgttatatacagccatgggagagtgagttcattgattctcagcgagtttgggca
gaatatgccctgaagaggcaggaagctcaatcacaaaataggcggttaacccttgaagat
ttagaagattcttgggatcgtggaatacctcgaatcaataccttatttcagaaggacaga
cacactcttgcatatgataaaggatggagagttcgtacagatttcaaacagtatcaagtt
ttgaagcaaaatccattttggtggacgcatcagagacatgatggaaaattatggaacttg
aataactatcgtacagatgtcatccaagcacttggaggggttgaaggaattctagagcat
accttgtttaagggaacttacttccctacttgggagggtctcttttgggagaaggcttct
ggttttgaggagtccatgaagtataagaagctgaccaatgcacaaagatctgggctcaat
caaattcctaaccgtagatttactctgtggtggtcgcctactataaatcgtgccaacgtg
tatgttggtttccaagtgcagctagatttgactggaatattcatgcatggaaagatacca
acattgaagatctctctcattcagatattccgtgctcacttatggcagaaggttcacgag
agcgtggtcatggatctctgccaggttttggatcaagagttggatgcattggaaatcgaa
actgttcagaaggaaaccatccatccgaggaagagttacaaaatgaacagctcttgtgct
gacgttcttctatttgctgctcacagatggcccatgtcaaagcctagtctagtagctgag
tcgaaggatgtgtttgatcagaaagccagcaataaatactggatagatgttcagctccgt
tggggagattatgactcccatgatattgagcgatatacccgggcaaagttcatggactac
accacagacaatatgtctatttacccttcgccaactggggtaatgattggccttgatctt
gcatataacttgcattctgcatttggaaactggtttcctgggtcaaaaccgctgcttgct
caggccatgaacaagattatgaagtcaaatccagctctatatgtcttgagagagcgaata
aggaaagggttgcagttgtattcttctgaacctacagagccatacttgtcgtctcagaac
tatggagagatattcagcaatcagataatttggtttgttgacgacacaaatgtgtatcgc
gtgacaatccacaagacttttgagggaaatctgacaacaaagcccattaatggcgccatc
ttcatattcaatccaagaactgggcagctatttctgaaggttattcacacaagtgtgtgg
gcaggacaaaagcgtctgggtcagctggccaagtggaagacagcagaagaagtagctgct
cttgtgcggtccttgcctgttgaagaacagccaaagcaaatcattgtgactcgtaaagga
atgcttgatcctttggaggttcacttgttggacttccccaatattgttatcaaaggaagt
gagctgcaacttcccttccaagcttgcttgaagattgagaaatttggtgatctcattctc
aaggctacagagccacaaatggtcttattcaacatatatgacgattggttgaaaagtatt
tcctcctacacagctttctctagacttattttgatcctgcgtgctcttcacgtaaacaat
gagaaggcaaagatgttattgaagcctgacaagacaatcgtcactgagccccatcacatt
tggccatctcttacagatgatcagtggatgaaggttgaagtcgctttgagagatcttata
ctttctgattatgccaaaaagaacaatgtgaacacatcagcattaacgcaatctgagatt
cgtgatataatacttggagctgagattactccaccctcacaacaaaggcaacaaattgct
gagattgagaaacaggcaaaagaagcaagtcaacttacagcagtcactacaaggacaaca
aatgttcatggcgatgagcttattgtcaccaccacaagtccctacgaacaagctgcattt
gggtctaaaactgattggcgtgtgagagcaatttcagccacaaatctttatctccgagta
aatcatatatatgtgaattcagaggacataaaggaaacgggatatacatacatcatgccc
aaaaacatattgaagaagttcatatgcattgcagatctacggactcaaatttcagggtac
ttgtatggcgtcagtcctccagacaatccccaggttaaggagatccgttgtattgcgatg
ccacctcaatggggtactcatcagcaagtgcatctcccatcggctcttcctgaacatgat
ttcctaaatgatttggagcctttgggatggatgcacactcagccaaatgagcttcctcaa
ttgtcaccacaggatctaactagccatgctcggatcctagagaataacaagcagtgggaa
ggggagaggtgcataatcttgacttgcagttttactccgggatcctgttcattgactgca
tataagcttacccccaccggttatgaatggggacgcgccaacaaagacaccggaagcaat
ccccatggctatttaccaacacattacgagaaggtccagatgctcctaagtgaccgcttc
ctcggtttctacatggttccggataatggtccatggaattacaacttcatgggagtgaag
catacggtgagcatgaaatatggggtcaagcttgggacacctagagagtactaccatgaa
gaccataggccgactcactacttggagttcagcaacttggaggagggtgagactgccgag
ggagacagggaggatacattcacttaa
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integrated database retrieval system
