Rhododendron vialii: 131335421
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Entry
131335421 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03013
Nucleocytoplasmic transport
rvl03015
mRNA surveillance pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131335421
09122 Translation
03013 Nucleocytoplasmic transport
131335421
03015 mRNA surveillance pathway
131335421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131335421
03041 Spliceosome [BR:
rvl03041
]
131335421
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131335421
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131335421
Spliceosome [BR:
rvl03041
]
Complex C
Other components
EJC/TREX
131335421
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131335421
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
131335421
NCBI-ProteinID:
XP_058226736
LinkDB
All DBs
Position
8a:32349213..32356960
Genome browser
AA seq
428 aa
AA seq
DB search
MGEVRDNEAYEEELLDYEEEDEKAPDSVNNKPSGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILG
LGRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKDIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcagggacaacgaagcttacgaggaagaacttctcgactacgaagaggag
gacgagaaggcccctgactccgtcaacaacaagccctctggcgaatccgccaagaagggt
tatgttggaattcacagttcgggattcagagatttcctgttgaaaccggagcttctccga
gccatcgtagattcaggatttgagcatccgtcagaagtgcaacatgaatgcatccctcaa
gctatcttaggaatggatgtcctctgtcaagcaaagtcggggatggggaaaactgctgtt
ttcgttctatctactctgcagcaaattgaacctgttgctggccaagttgctgcccttgtc
ctttgtcatacaagagagctggcttaccagatctgtcacgaatttgagaggttcagtacg
tatttgcctgatattaaggttgccgtcttctatggtggtgtcaacattaaggttcacaag
gatttactgaagaatgaatgccctcatattgttgtgggaacgcctggaagaatactgggt
cttggaagagataaggacctcggcttaaagaatgtgaggcattttatccttgatgagtgt
gacaagatgctcgagtcactcgatatgaggaaagatgtgcaggagatttttaagatgacc
cctcatgataagcaagttatgatgttttcagctaccctcagcaaagacatccgcccggtt
tgcaagaagtttatgcaagatccaatggaaatttacgtggatgatgaggccaaattgact
cttcatggtctagtacagcattacattaaattgagcgagcttgagaaaaaccgcaagctg
aatgacctccttgatgcattggatttcaaccaagttgtcatttttgtcaaaagtgtcaac
agagcagctgaactgaacaagttacttgtggagtgcaactttccttctatttgcatccat
tctggaatgtctcaggaagaaaggttgacacgctacaagagtttcaaggaggggcacaaa
agaattcttgtggcgactgatttagttggaagaggaattgacattgaacgagtgaacatt
gttatcaactatgacatgcctgattctgctgacacatacctgcatcgtgttggtagagct
ggtcgctttggcaccaaggggcttgcaattacgtttgtcgcttctgcatccgactctgat
gttctcaatcaggttcaggaaaggtttgaggtggatatcaaggaacttccagagcaaatt
gacacttctacgtacatgccatcttga
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