KEGG   Rhododendron vialii: 131335731
Entry
131335731         CDS       T09330                                 
Name
(RefSeq) DNA mismatch repair protein MSH2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
rvl  Rhododendron vialii
Pathway
rvl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    131335731
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rvl03400]
    131335731
DNA repair and recombination proteins [BR:rvl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     131335731
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II Exonuc_VII_S DUF2987 YebG
Other DBs
NCBI-GeneID: 131335731
NCBI-ProteinID: XP_058227199
LinkDB
Position
8a:complement(18994474..19004129)
AA seq 937 aa
MDENFQDLNKVPELKLDAKQAQGFLSFFKTLPRDPRAIRFFDRRDYYTAHGENATFISKT
YYHTTSALRQLGNGSDAISSVSVSRSMFETITRDLLLERTDHTLELYEGSGSNWRLVKSG
SPGNLGSFEEILFANNEMQDSPVIVALTPNFRENECTVGIGYIDLTKRVLGLGEFLDDCH
FTNVESALISLGCKECLLPMDNAKSSEYKPLHDALSRCGVMLTERKKTEFKGRDLVQDLG
RLVKGSIEPVRDLVSGFEYANGALGSLLSYAELLADESNYGSYSIREYSLNSCMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQTF
VEDTALRQDLRQHLKRISDIERLVRYLEKRRANLQQIVKLYQSGIRLPYIKSALERNEGQ
FSSLIKQRYLEPLEELTDDSHLNRFISLVEAAVDLDQLENGEYMISPSYDPKLCQLKDEQ
VSLEQQIHRLHQQTANDLDLAADKALKLDKGTQFGHVFRITKKEEPKIRKKLNIHFIVLE
TRKDGVKFTNTKLKKLGDQYQKILEEYKNCQKVLVARVVQTAATFCEVFESLAVLLSELD
VLLSFADLAASCPTPYTRPYITLSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQIIKAPTLFATH
FHELTALAHEPSSEKLVGVVNYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANF
PETVIALAREKAAELEDFSPIDVISNDAIEEVGCKRKREYDPEDTSRGAARAHQFLKDFS
ALPLEKMDFKEAFEKVSELKNEFAKDAVNSLLLQRFL
NT seq 2814 nt   +upstreamnt  +downstreamnt
atggacgaaaattttcaggaccttaacaaggttcctgagctcaaactcgatgctaagcaa
gcacaagggtttctctccttcttcaaaaccctaccccgtgaccctagggctattcggttc
ttcgatcgccgggactattataccgctcatggagagaatgcaacttttatctcaaagacg
tattatcatactacttctgctttacgtcaactgggtaatgggtctgatgctatttcaagt
gttagtgtcagtagaagcatgtttgagaccattacccgcgatcttctcttggagagaaca
gaccatactcttgaactatatgaagggagtgggtcaaattggagactagtgaaaagtgga
agcccgggaaacctaggcagttttgaagaaattttgtttgccaacaatgagatgcaggat
tctcctgtgattgttgcccttaccccaaatttccgcgaaaatgagtgcactgttgggatt
ggctatattgatcttactaagagagtgcttggattgggggaatttctggatgattgccac
tttacaaatgtggagtcagcattaatttctcttggttgcaaggaatgtcttttacctatg
gacaatgcgaaatccagtgaatataaacctttacatgatgcattgtcaagatgtggcgtg
atgctaacagagagaaagaaaactgagttcaaaggaagggatttggttcaggatcttggt
agacttgtcaaagggtctattgaaccagttcgagatttagtatctgggtttgaatatgcc
aatggggcattgggttcattgctatcctatgcagaactactcgcagatgagagcaattat
ggaagttatagtatcagagagtacagccttaacagctgcatgaggttggattctgctgct
atgagggctctgaatgtcatggagagcaaaactgacgctaacaaaaatttcagtttgttt
ggactcatgaatagaacctgtactgctgggatgggtaagagattactgcacatgtggctg
aaacagcctttactagacgtgaatgaaatcaactccaggttggatttggtacaaactttt
gtggaggatactgctcttcgccaggatttgaggcagcacttaaaaagaatttctgatatt
gagcgactggtgcggtatcttgaaaagcggagagctaacttgcagcaaattgtaaagctt
tatcagtctggcattagacttccatacattaaaagtgccttggaaaggaatgaagggcaa
ttttcatcactcattaagcagaggtatctggagcctttggaggagttgactgatgacagt
cacttgaataggttcattagccttgtggaagctgctgtagaccttgatcaacttgagaat
ggggaatacatgatttcacccagttacgaccccaaattatgtcaactgaaggacgagcaa
gtatcattggaacagcaaatacatagattgcatcagcaaacagctaatgaccttgatttg
gctgcggataaggctctcaagttggataagggcacccaatttggccatgtctttagaata
acaaagaaggaagaaccgaaaatcaggaagaagcttaatatccacttcattgttcttgag
actcgcaaggatggggtgaagtttacaaatacgaagcttaagaagttaggggatcagtac
cagaagatacttgaggagtataagaactgtcaaaaagtgttggttgccagagtggttcaa
actgctgcaactttctgtgaggtctttgagtctctagcggttttgctctctgaactggat
gtcttacttagttttgctgacctggctgctagttgcccaactccctacacaaggccgtac
attacgctgtcggatgtgggtgatattgtattagaagggagtagacatccttgtgtggag
gcacaagattgggtgaattttataccaaacgattgtagactggttagggggaaaagttgg
ttccagattatcacggggcctaacatgggtggaaaatccacgttcattaggcaggttggt
gtgaacatcttgatggcacaagttggatcttttgttccttgtgacaaagctagcatttct
gtccgtgactgtatctttgctcgagttggtgccggggactgccagcttcgtggagtttct
acctttatgcaagaaatgcttgagactgcgtcaattctgaaaggagctactgacaagtca
ctgataatcatcgatgaattgggtcgtggaacatcaacatatgatggatttggtttggct
tgggccatctgtgagcaccttgttcaaatcattaaagcacctactttgtttgcaacccat
tttcatgaacttactgcattggctcatgaaccttcgtcagagaaacttgttggtgtggta
aattatcatgtcagtgcacacattgactcatcaagtcgcaagttgaccatgctttacaag
gttgagccaggggcttgcgatcaaagttttggcattcacgttgctgaatttgcaaacttc
ccagaaactgttatcgcccttgccagagaaaaggctgcagagttggaagatttctcacca
atagatgtcatttcaaatgatgccatagaagaggtaggatgtaaacggaagagagagtat
gatcctgaggacacgtccagaggtgccgctagggcccaccagtttctgaaagatttctct
gcattgccgctagaaaaaatggacttcaaagaagcttttgagaaagtgagtgaattgaag
aatgagtttgcgaaagatgctgtcaactccctcttgcttcagcgattcctttag

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