Rhododendron vialii: 131335731
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Entry
131335731 CDS
T09330
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rvl
Rhododendron vialii
Pathway
rvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131335731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131335731
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131335731
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Exonuc_VII_S
DUF2987
YebG
Motif
Other DBs
NCBI-GeneID:
131335731
NCBI-ProteinID:
XP_058227199
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Position
8a:complement(18994474..19004129)
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AA seq
937 aa
AA seq
DB search
MDENFQDLNKVPELKLDAKQAQGFLSFFKTLPRDPRAIRFFDRRDYYTAHGENATFISKT
YYHTTSALRQLGNGSDAISSVSVSRSMFETITRDLLLERTDHTLELYEGSGSNWRLVKSG
SPGNLGSFEEILFANNEMQDSPVIVALTPNFRENECTVGIGYIDLTKRVLGLGEFLDDCH
FTNVESALISLGCKECLLPMDNAKSSEYKPLHDALSRCGVMLTERKKTEFKGRDLVQDLG
RLVKGSIEPVRDLVSGFEYANGALGSLLSYAELLADESNYGSYSIREYSLNSCMRLDSAA
MRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQTF
VEDTALRQDLRQHLKRISDIERLVRYLEKRRANLQQIVKLYQSGIRLPYIKSALERNEGQ
FSSLIKQRYLEPLEELTDDSHLNRFISLVEAAVDLDQLENGEYMISPSYDPKLCQLKDEQ
VSLEQQIHRLHQQTANDLDLAADKALKLDKGTQFGHVFRITKKEEPKIRKKLNIHFIVLE
TRKDGVKFTNTKLKKLGDQYQKILEEYKNCQKVLVARVVQTAATFCEVFESLAVLLSELD
VLLSFADLAASCPTPYTRPYITLSDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQIIKAPTLFATH
FHELTALAHEPSSEKLVGVVNYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANF
PETVIALAREKAAELEDFSPIDVISNDAIEEVGCKRKREYDPEDTSRGAARAHQFLKDFS
ALPLEKMDFKEAFEKVSELKNEFAKDAVNSLLLQRFL
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaattttcaggaccttaacaaggttcctgagctcaaactcgatgctaagcaa
gcacaagggtttctctccttcttcaaaaccctaccccgtgaccctagggctattcggttc
ttcgatcgccgggactattataccgctcatggagagaatgcaacttttatctcaaagacg
tattatcatactacttctgctttacgtcaactgggtaatgggtctgatgctatttcaagt
gttagtgtcagtagaagcatgtttgagaccattacccgcgatcttctcttggagagaaca
gaccatactcttgaactatatgaagggagtgggtcaaattggagactagtgaaaagtgga
agcccgggaaacctaggcagttttgaagaaattttgtttgccaacaatgagatgcaggat
tctcctgtgattgttgcccttaccccaaatttccgcgaaaatgagtgcactgttgggatt
ggctatattgatcttactaagagagtgcttggattgggggaatttctggatgattgccac
tttacaaatgtggagtcagcattaatttctcttggttgcaaggaatgtcttttacctatg
gacaatgcgaaatccagtgaatataaacctttacatgatgcattgtcaagatgtggcgtg
atgctaacagagagaaagaaaactgagttcaaaggaagggatttggttcaggatcttggt
agacttgtcaaagggtctattgaaccagttcgagatttagtatctgggtttgaatatgcc
aatggggcattgggttcattgctatcctatgcagaactactcgcagatgagagcaattat
ggaagttatagtatcagagagtacagccttaacagctgcatgaggttggattctgctgct
atgagggctctgaatgtcatggagagcaaaactgacgctaacaaaaatttcagtttgttt
ggactcatgaatagaacctgtactgctgggatgggtaagagattactgcacatgtggctg
aaacagcctttactagacgtgaatgaaatcaactccaggttggatttggtacaaactttt
gtggaggatactgctcttcgccaggatttgaggcagcacttaaaaagaatttctgatatt
gagcgactggtgcggtatcttgaaaagcggagagctaacttgcagcaaattgtaaagctt
tatcagtctggcattagacttccatacattaaaagtgccttggaaaggaatgaagggcaa
ttttcatcactcattaagcagaggtatctggagcctttggaggagttgactgatgacagt
cacttgaataggttcattagccttgtggaagctgctgtagaccttgatcaacttgagaat
ggggaatacatgatttcacccagttacgaccccaaattatgtcaactgaaggacgagcaa
gtatcattggaacagcaaatacatagattgcatcagcaaacagctaatgaccttgatttg
gctgcggataaggctctcaagttggataagggcacccaatttggccatgtctttagaata
acaaagaaggaagaaccgaaaatcaggaagaagcttaatatccacttcattgttcttgag
actcgcaaggatggggtgaagtttacaaatacgaagcttaagaagttaggggatcagtac
cagaagatacttgaggagtataagaactgtcaaaaagtgttggttgccagagtggttcaa
actgctgcaactttctgtgaggtctttgagtctctagcggttttgctctctgaactggat
gtcttacttagttttgctgacctggctgctagttgcccaactccctacacaaggccgtac
attacgctgtcggatgtgggtgatattgtattagaagggagtagacatccttgtgtggag
gcacaagattgggtgaattttataccaaacgattgtagactggttagggggaaaagttgg
ttccagattatcacggggcctaacatgggtggaaaatccacgttcattaggcaggttggt
gtgaacatcttgatggcacaagttggatcttttgttccttgtgacaaagctagcatttct
gtccgtgactgtatctttgctcgagttggtgccggggactgccagcttcgtggagtttct
acctttatgcaagaaatgcttgagactgcgtcaattctgaaaggagctactgacaagtca
ctgataatcatcgatgaattgggtcgtggaacatcaacatatgatggatttggtttggct
tgggccatctgtgagcaccttgttcaaatcattaaagcacctactttgtttgcaacccat
tttcatgaacttactgcattggctcatgaaccttcgtcagagaaacttgttggtgtggta
aattatcatgtcagtgcacacattgactcatcaagtcgcaagttgaccatgctttacaag
gttgagccaggggcttgcgatcaaagttttggcattcacgttgctgaatttgcaaacttc
ccagaaactgttatcgcccttgccagagaaaaggctgcagagttggaagatttctcacca
atagatgtcatttcaaatgatgccatagaagaggtaggatgtaaacggaagagagagtat
gatcctgaggacacgtccagaggtgccgctagggcccaccagtttctgaaagatttctct
gcattgccgctagaaaaaatggacttcaaagaagcttttgagaaagtgagtgaattgaag
aatgagtttgcgaaagatgctgtcaactccctcttgcttcagcgattcctttag
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