Rhododendron vialii: 131335892
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Entry
131335892 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131335892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131335892
03009 Ribosome biogenesis [BR:
rvl03009
]
131335892
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131335892
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131335892
Complex B
131335892
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131335892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
131335892
NCBI-ProteinID:
XP_058227434
LinkDB
All DBs
Position
8a:complement(28393717..28400187)
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AA seq
707 aa
AA seq
DB search
MMNHYDQRYVDPDSYRPRRSDFTGPPPPSVGPPMTGGVVPNYGRGVPAPYGGPPVPYTAS
GRGIGGVPGGVGGFNGYPPFQPDVGRGFDIGRGGGGRGGRGGGGRGFSDGIGGGRGRGDD
GMANGGLANRRGGDTSFGRGGGTGREGGPGGGGGGRGFYSSRGGGRAGGGGGRGFGGRSF
DGGRAGGRGSDAGRGSGGRSFGGGGGMGFDGGRGGGRGGRHGGSRGDLDNIALPKQDFGN
IVPFEKNFYIETPSVRAMSEQDVMLYRARREITVEGHDVPRPIRRFEEANFPGYCLETIV
RLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPPLAQGEGPIV
LVLAPTRELAVQIQEESFKFASRTNMRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLID
MLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVETLA
RQFLRNPYKVIIGSSELKANQSINQVVEVMTEVEKYKRLIRLLSESMDGSRILVFMETKK
GCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKNGRSPIMTATDVAARGLDVKDIKC
VINYDFPSSLEDYVHRIGRTGRAGARGTAFTFFTHANAKFARDLIKILQEAGQIIPPALA
ALARSAGSGLGASGGNFRSRGRGGFGNRSLISGSNTIPLGSKRERPW
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaccattacgaccaaagatacgtcgaccctgattcctaccgcccccgtcgaagc
gacttcacggggccgccgccgccttcggtgggcccccctatgacgggaggggtagtcccc
aactacggccgcggggtgcctgccccgtatggtggtcctccggtgccttacaccgccagt
ggaagaggtatcggtggtgtaccgggtggtgttggtggttttaatgggtaccctcctttc
caacctgatgttggccgagggtttgatatcggccgaggtggtggaggacgaggaggaaga
ggtggtggtggaaggggatttagcgatgggataggtggagggaggggaaggggtgacgat
ggaatggccaatggtgggttggcgaatagaagaggaggtgatacaagctttggaagaggt
ggtggaacgggtcgtgagggggggccaggtggtggtggtggagggaggggattttattct
agtcgcgggggaggtagggctggtggtggaggtggccgtggatttggtggtagaagtttt
gatggaggtagggccggtggtaggggttctgatgctggtagaggtagtggtggtaggagc
tttggtggcggaggaggaatggggttcgatggaggccgtggtggcgggagaggtggtaga
catggaggatcaaggggagacttggataatattgctcttccaaagcaagattttggtaac
atagtcccttttgagaagaacttttatattgagactccttctgtgagagcaatgtcggag
caagacgttatgctttaccgcgctagacgtgaaattaccgtggaaggccatgacgtccca
aggcccattcgaaggtttgaagaggcaaactttcctggttattgcctggagactatcgtc
agattgggcttcgttgagccaacgcctattcagtcacaaggatggccaatggccttaaag
gggagagatttaattggcattgctgagacaggttctggaaagactttagcatatctgcta
cctgctttggttcatgttagtgcacagcctccattggcacaaggtgaaggtcccattgtt
ctggtattagcacctactagagaattggctgttcaaattcaggaagaatcttttaaattc
gcatcacgtacaaatatgagaagtacctgcatctatggtggtgccccaaaaggaccacag
attcgtgatcttcaaagaggtgttgaaattgtcattgccacacccggtcgactgattgat
atgttagaagctcagcacacaaacttgagaagagttacttacctcgtattggatgaggct
gatcgaatgttggacatgggttttgagcctcagatcaggaaaatcgtggcccagatacgg
ccagataggcagacattgtattggagtgccacgtggccaagggaagtggaaactctagca
aggcagtttttacgcaatccatataaggtaattattggctcctcagaacttaaagcaaat
caatctatcaaccaagttgttgaagttatgacagaggtggagaagtacaagaggctgatc
agattgctctcagaatccatggatggaagtcgcatactagtttttatggagacaaaaaaa
ggatgtgaccaagtcactaggcagttgagaatggatgggtggccagctttgtccattcat
ggtgataaaaaccaggccgaaagagattgggtcctggctgagtttaaaaatggcaggagt
cctataatgactgccactgatgttgctgcacgtggtcttgatgtgaaagacataaaatgt
gtgatcaattacgattttccatcaagtctggaggattatgtccacaggattggccgaact
ggtcgtgctggagctaggggaactgcctttacatttttcactcatgcaaatgctaagttt
gctcgagatctcatcaagattctgcaagaagcagggcaaatcattcctcctgcattggct
gcattggctcgttcagctggttcaggtcttggagcttctggtggcaacttccggtcaaga
gggcgaggtggttttggcaacaggagtttgatttcgggatccaacactattcctcttgga
tccaagagggagaggccttggtag
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