Rhododendron vialii: 131336498
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Entry
131336498 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131336498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131336498
03009 Ribosome biogenesis [BR:
rvl03009
]
131336498
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131336498
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131336498
Complex B
131336498
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131336498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
131336498
NCBI-ProteinID:
XP_058228349
LinkDB
All DBs
Position
8a:complement(34094585..34101317)
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AA seq
504 aa
AA seq
DB search
MSRYDSRSADPTSYRDRRSDSGFGGASGYGGARSSSSRRVDYDGAESPRKLDLDGLTPFE
KNFYAESPEVAAMSEREVEEYRLRREITVEGRDVPKPVKAFGDVGFPEYVLQEIVKAGFS
EPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEATKFGSSSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESH
HTNLRRVTYLVLDEADRMLDMGFEPQIQKIVSQIRPDRQTLYWSATWPKEVEQLARRFLY
NPYKVVIGSPDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQKVSPELATMGRG
APPPPGHGGFRDRGRGYSGGRSWS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgttacgacagccgctccgccgaccccacttcttaccgcgaccgccgaagtgat
tcggggtttggtggggcttcgggttacggtggggcccggtcctcgtctagcaggagggtc
gactacgacggggcggagtcgccgcgcaagttggatttggacgggttgactccgttcgag
aagaacttctatgccgagtcgccggaggtggcggcaatgtcggagagggaggtggaggag
tatcggctgcggcgggagatcactgtcgaaggtcgggacgtgccgaagccggtcaaggct
ttcggtgatgttgggtttccagaatacgttttgcaagaaattgtcaaagccggcttttca
gaacctacagcaattcaagctcaaggatggccaatggctttaaagggccgtgatctcatt
ggtattgctgaaacaggttcaggcaagacacttgcatacctattgcctgcaattgttcat
gtcaatgctcagccaattttagctccgggcgatggtcccattgtgttagttttagctcca
acacgtgaacttgctgttcagatacagcaagaagctaccaagtttggttcatcttcaagg
attaaaagtacctgcatatatggtggggttccaaaggggccccaagttcgtgatctccag
aaaggtgttgaaattgttattgctactcctggaaggttgattgacatgatggaatctcac
catacgaatttgcgacgggtaacgtaccttgtgttggatgaggcagatcgaatgcttgac
atgggatttgaaccacagattcaaaaaattgtttctcagattcgccctgatcgtcaaacg
ttgtactggagtgccacatggcccaaggaggttgaacaacttgcgagacgattcctttac
aacccatacaaagtcgtgataggttccccagatttgaaagctaaccatgcaattcgccag
catgtggatattgtttcggagaaccagaaatataacaaattggtgaagttgctggaagat
atcatggatggaagccggatcttgattttcatggatacaaagaaagggtgtgaccaaatt
actcggcagcttcgcatggatggctggcctgcactctctattcatggagataagagtcaa
gcagaaagggattgggtcctctcagagtttaaagctggcaagagtcctataatgactgca
actgacgttgcagctcgtggtttagatgtgaaggatgtaaaatatgtgatcaactacgac
tttccgggatcgctggaggattatgttcaccgcatcggacgaacaggaagagctggggcc
aaaggaacggcatatacttttttcacagctgcaaatgccagatttgcgaaagagctcata
agcatactagaggaagctggacagaaggtcagtcctgagttggcaacaatgggtcgtggt
gcacctcctcccccaggtcatggcggtttccgagatcgcgggcggggttacagtggcggt
cgctcttggagctaa
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