Ralstonia wenshanensis: KOL96_13325
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Entry
KOL96_13325 CDS
T08691
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rwe
Ralstonia wenshanensis
Brite
KEGG Orthology (KO) [BR:
rwe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rwe03009
]
KOL96_13325 (rlmD)
Enzymes [BR:
rwe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KOL96_13325 (rlmD)
Ribosome biogenesis [BR:
rwe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KOL96_13325 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
TRAM
Methyltransf_23
RrnaAD
CMAS
UPF0020
Cons_hypoth95
MTS
Methyltransf_11
PCMT
DOT1
DREV
Methyltrans_SAM
Methyltr_RsmB-F
TPMT
Motif
Other DBs
NCBI-ProteinID:
UGS92622
LinkDB
All DBs
Position
1163006..1164358
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AA seq
450 aa
AA seq
DB search
MPVAGPLEIVSLDGEARGIGRLMNEDGTPGKVVFVEGALPGERVMYRSHRVKPSYEQASV
VNILRQSASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRP
IAGPDWGYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPAHVSALLVPLREL
VGRLSIVQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRTFADHHNVQFWLQPKGPDT
VYPFHPLDRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLF
CGIGNFTLPMATRAREVMGIEGSEALTTRALANAQYNGLDAKTTFACRNLFEVTADDIAA
LGKFDRWLIDPPREGALAVSKALAELFQRGGDAAELLPKRIVYVSCNPATLARDAGLLVH
EAGYRLAGAGVVNMFPHTSHVESMAVFERD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtggcagggccgctggaaatcgtctcgctcgatggcgaagcgcgtggcatcggg
cgtttgatgaacgaggatggcacgccgggcaaggttgtttttgtggaaggcgcactgccg
ggtgagcgggtgatgtatcgcagtcaccgcgtcaagccttcatacgagcaggcgagcgtc
gtgaacattctgcgccagtccgcctcgcgcgtgacgccgcaatgcaagttctttggtgtg
tgcggtggttgctcgatgcagcatctggattcgcgcgcgcaggttgcgatcaagcagcgc
gtgctggaagatgatctgtggcatttggccaaactgcgtccggacgtggtgttccggccc
attgccggccccgattggggctaccgctatcgggcgcgtttgaccgtgcgccatgttgcg
gccaaaggtggcgtgctggtgggttttcacgagcgcaaaagcagttatgtggcggacatg
acgtcgtgcgaggtgttgccggcgcacgtgtccgcgctgctggtgccgttgcgcgaattg
gtggggcgcctgtcgatcgtgcagcgcatgccgcagatcgagctcgcggtcggccaggat
gtgaccgcgctggtgttgcgtaacctggagccgatcaccgctgaggatgaggccgaactg
cgcacttttgccgatcatcacaacgttcagttctggctgcagcccaaggggccggatacg
gtctatccgttccatccgctggatcgtacgctgacgtacacgctgcccgagttcggcatc
accatgccgttcaagccgactgatttcacgcaggtcaatcaccagatcaaccgggtgctg
atgtcgcgggcgctgaagctgctcgatgcgcaaccgggtgatcggctgctcgacctgttc
tgcggtatcggcaacttcacgctgccaatggcgacgcgtgcccgcgaggttatggggatc
gagggcagtgaggcgctgacgacgcgtgccttggccaacgcccagtacaacggcctggac
gcgaagacaacatttgcttgtcgcaatctgttcgaagtgacggctgatgatattgccgcg
ctgggcaagtttgaccgttggctgatcgatccgccgcgcgaaggcgcgctggctgtgtcc
aaggcgctggccgagttgtttcagcgtggcggtgatgcggctgaattgttgccgaagcgc
atcgtctacgtgtcgtgcaatccggcgacgctggcgcgcgacgcgggtctgcttgtgcat
gaagccggctacaggctggccggtgcgggcgtagtcaacatgttcccgcacacatcgcac
gtcgagtcgatggcggtattcgagcgcgactaa
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