Rubrobacter xylanophilus: Rxyl_1420
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Entry
Rxyl_1420 CDS
T00368
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rxy
Rubrobacter xylanophilus
Pathway
rxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rxyl_1420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rxy03019
]
Rxyl_1420
Messenger RNA biogenesis [BR:
rxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rxyl_1420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ABG04382
UniProt:
Q1AW46
LinkDB
All DBs
Position
1441471..1443114
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AA seq
547 aa
AA seq
DB search
MHVVPLGGLGEIGKNMTAVHQRSGMLVVDAGMAFPDEEMPGIDLVLPDFTYLREHADRLR
GILLTHGHEDHVGAIPYLLREFRAPVYGTRLTLGLVESKLQEFGVKNADLREVSAGEKFS
FGGFNVEFINVNHSIPGAVAVALRTSAGLFVFSGDYKVDLTPIEGEPIDLGRLAALGEEG
VLAYFGDSTNSERPGYVPSERVVGETLNEVFRSVEGRIIVASFASHIHRIQQVVEAAKQH
DRLVAVTGRSMVRNVQIARELGYLDLPDAMMVDQRDIRRIPDQDLVVLTTGSQGEPLAAL
SRIASGTHRTIEVGPDDAVVVAAHPIPGNERGVSRTINNLMRRGAQVFYSPLKPVHVSGH
AAQEEQKLMLSLLKPRYLVPMHGEFRHLMHHAFTARSLGIPEERIFVLENGARLEFRGRE
ARRIENVPSGMFVVDGGGLADTSGAVMRERQQLAEEGMFIVVARIDSQSGALVGEPDVIS
RGFVDPQAANGLVEASIEVVSRTLRRTASRNITDWGQLKNEIRRDLTSFLAERTNKRPMI
LPLIVEV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgtcgtgcccctcggggggctcggcgagatcggaaagaacatgaccgccgtccac
cagcggagcgggatgctcgtcgtggacgcgggcatggcgttccccgacgaggagatgccg
ggcatagacctggtgctgcccgacttcacctacctgcgggagcacgcggacaggctgcgg
gggatcctcctcacccacggccacgaggaccacgtcggggccataccctacctgctgagg
gagttcagggcccccgtctacgggacgcgcctcaccctcgggcttgtggagagcaagctg
caggagttcggcgtcaagaacgccgacctgcgggaggtgagcgccggggagaagttcagc
ttcgggggcttcaacgtggagttcataaacgtcaaccactccatccccggggcggtggcg
gtggcgctgcgcacgagcgcggggctcttcgtgttctccggcgactacaaggtggacctc
acccccatagagggcgagccgatagacctgggccggctggcggccctgggcgaggagggg
gtgctggcgtacttcggggactcgacgaactccgagcgccccggatacgtgccctccgag
cgcgtggtgggcgagacgctcaacgaggtcttccgcagcgtggaggggaggatcatcgtg
gcctccttcgcctcccacatccaccgcatccagcaggtggtcgaggcggccaagcagcac
gaccgcctggtggcggttaccggccgctccatggtccgcaacgtgcagatcgcccgcgag
ctgggctacctggacctccccgacgccatgatggtggaccagcgggacataaggcgcatc
cccgaccaggacctggtggtgctcacgaccggctcgcagggcgagccgctcgccgccctc
tcccggatagcgagcggcacccaccgcacgatagaggtgggcccggacgacgcggtggtg
gtcgccgcccaccccatccccggcaacgaacgcggggtctcccgcacgatcaacaacctg
atgcgccgcggggcccaggtgttctacagccccctcaagccggtgcacgtctcgggccac
gccgcccaggaggagcagaagctgatgctctccctcctcaagccgcgctacctggtgccg
atgcacggggagttccgccacctgatgcaccacgccttcaccgcgaggtccctgggcatc
ccggaggagcggatcttcgtgctggagaacggagcccgcctggagttccgcggccgggag
gcccgccgcatagagaacgtcccctccgggatgttcgtggtggacggcggcgggctggcc
gacacctccggcgcggtgatgcgcgagcgccagcagctcgccgaagagggcatgttcatc
gtcgtggcccgcatcgactcccagagcggcgccctcgtgggcgagccggacgtgatctcg
cgcggcttcgtggacccgcaggccgcaaacggcctggtcgaggcctccatcgaggtggtc
agccgcaccctgcgccgcaccgcgagccgcaacataaccgactggggccagctgaagaac
gagatccgacgcgacctcacctccttcctggccgaacgcaccaacaagcgccccatgatc
ctgccgctaattgttgaggtttga
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integrated database retrieval system
