Rubrobacter xylanophilus: Rxyl_2161
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Entry
Rxyl_2161 CDS
T00368
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rxy
Rubrobacter xylanophilus
Pathway
rxy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rxy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rxyl_2161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rxy03021
]
Rxyl_2161
03400 DNA repair and recombination proteins [BR:
rxy03400
]
Rxyl_2161
Enzymes [BR:
rxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rxyl_2161
Transcription machinery [BR:
rxy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rxyl_2161
DNA repair and recombination proteins [BR:
rxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rxyl_2161
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF5497
DUF8118
Motif
Other DBs
NCBI-ProteinID:
ABG05105
UniProt:
Q1AU23
LinkDB
All DBs
Position
complement(2173406..2177293)
Genome browser
AA seq
1295 aa
AA seq
DB search
MQALERDIDINRLEKISIGLASADEIREWSRGEVTKPETINYRTLRPEKDGLFDERIFGP
TKDWECYCGKYKRIRFKGIICERCGVEVTRARVRRDRMGHIELAAPVAHVWFVKGVPSRM
GYLLDISPKDLDRVLYFASSIVTWVDREGRANDIDRLRQQVEEEIRQIEQDRDEEITAAQ
ALLTKRISVIKGESSPDELTEDYADVPEEEREEAIARARREAEETIEDIKRSMDEQIELI
RRAWEEFQTLEPRQIVDDEELFREMKDRFGDEYGYGVYFRGGMGAEAIRDLIRQVDLEKE
ARELRQVVGESRGQKRQKAIKRLKVVDAFRTSGNKPEWMILDAIPVLPPDLRPMVQLDGG
RFATSDLNDLYRRVINRNNRLKRLLDLGAPDVIVNNEKRMLQEAVDALFDNGRRGRAVTG
AGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLEMHQCGLPRLMAVELFK
PFVMKVLVDRALAPNIRSAKQMVERLRPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFE
PVLVEGKAIQIHPLVCAAFNADFDGDQMAVHVPLSPEAQAEARILMLSTQNILKPADGFP
VAVPSQDMVLGLYYITYAGEDFEEREPKALLASYAEADNAYREGSLRLHDKVILRREGER
IETTLGRVLFNESIERTLRGYLGDAYNPAAYRFVNHELKKGEIKQLVQQYVERYPTELVS
QLLDTLKHVGFHTATLAGISIGKNDIVVPEQKREILEKYEKLVEEVEEQWEAGFISDEER
AERVIGLWTQAKNEVEEAMKANLWKLNPIYMMANSGARGSYSQITQLAGMRGLMTNAKGE
IIDEPVKSNFMEGLTVLEYFTSTHGARKGQADTALRTADSGYLTRRLVDVAQDVVIREED
CGTDGYIELPLYLEDGQGDPNDSVAARYLARDLVNPETGEVVAEAGTDITRPLFEAWLEE
LPRETKVPVRTPTKCENPHGVCQKCYGRSLATNRPVDVGEAVGIIAAQSIGEPGTQLTMR
TFHTGGVSGVEDITAGLPRVVELFEARHPKGEAVISDIDGIVSLEETDSERLVRVVVTAP
DGSEAREYRVERQLLRPEIVDGAEIRANTPITEGSLYPHQILENDLRYGRGTTATERYLV
DEVQKVYRAQGVDIHDKHIEIIVRQMLRKVLVEEPGDTRFLPEQVADRFSVLAENERVEE
EGGRPAEFHTILMGITKASLATESFLSAASFQETARVLTDAAIEGKVDNLTGLKENVIIG
KLIPAATGLPKYRRLTVTVEGYRADDVDELDIAAS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggctttggagcgcgatatcgacataaacaggctagagaagatctccatcggcctc
gcctcggccgatgagatccgggagtggtcccgcggcgaggtcaccaagccggagaccata
aactaccggacgctgcggccggagaaggatggcctgttcgacgagcgcatcttcggtccc
accaaggactgggagtgctactgcggcaagtacaagaggatccgcttcaagggcatcatc
tgcgagcgctgcggggtggaggttacccgggcgcgcgtccggcgcgaccggatgggccac
atcgagctggccgccccggtggcgcacgtgtggttcgtgaagggcgtgcccagccggatg
gggtatctgctggacatcagccccaaggatctcgaccgggtgctctacttcgccagctcc
atcgtcacctgggtcgaccgggagggccgggccaacgacatcgaccggctccggcagcag
gtggaggaggagatccggcagatagagcaggaccgggacgaggagatcaccgccgcccag
gccctgctcaccaagcggatcagcgtgatcaagggcgagagcagcccggacgagctcacc
gaggactacgcggacgttcccgaggaggagcgtgaggaggccatagcccgggcccggcgg
gaggccgaggagaccatcgaggacatcaagcgctcgatggacgagcagatcgagctcatc
cgccgggcgtgggaggagttccagacgctcgagccgcgccagatcgtggacgacgaggag
ctcttccgcgagatgaaggaccgcttcggggacgagtacggctacggcgtgtacttccgg
ggcggcatgggtgccgaggccatccgggacctgatccgccaggtggacctggagaaggag
gcgcgggagctgcggcaggtcgtgggcgagtcccgcggccagaagcgccagaaggccata
aagcgcttgaaggtggtggacgccttccgcaccagcggcaacaagccggagtggatgatc
ctcgatgccatccctgtgctgccgccggatctcaggccgatggtgcagctggacggcggc
cggttcgccaccagcgacctcaacgacctctaccgcagggtcataaaccggaacaaccgc
ctcaagcggctgctggacctcggcgcgccggacgtcatcgtcaacaacgagaagcggatg
ctgcaggaggccgtcgacgccctcttcgacaacggacgccgcggccgggcggtcaccggc
gcgggcaaccggcccctgaagtccctctcggacatgctcaagggcaagcagggccgcttc
cggcagaacctgctgggcaagcgcgtggactactccggccgctcggtcatcgtggtcggc
ccgcagctggagatgcaccagtgcggcctgccgcgcctgatggcggtcgagctgttcaag
ccgttcgtgatgaaggtgctggtcgaccgcgcgctcgcgccgaacatccgcagcgccaag
cagatggtggagcggctcaggcccgaggtgtgggacgtgctggaggacgtgatcaaggag
caccccgtgctcctgaaccgcgcccccacgctgcaccgcctgggcatccaggccttcgag
ccggtcctggtggaggggaaggccatccagatccacccgctggtctgcgcggcgttcaac
gcggacttcgacggcgaccagatggcggtgcacgtgcccctgagccccgaggcgcaggcc
gaggcgcgcatcctgatgctctcgactcagaacatcctgaagccggccgacggcttcccg
gtggccgtgccctcccaggacatggtgctcggcctctactacatcacctacgccggggag
gacttcgaggagcgcgagcccaaggcgctgctggcctcctacgccgaggcggacaacgcc
taccgcgagggctcgctccggctgcacgacaaggtcatcctccggcgcgagggcgagagg
atcgagaccaccctcgggcgggtactcttcaacgagagcatcgagcgcaccctgcgcggc
tacctgggcgacgcctacaaccccgccgcctaccgcttcgtcaaccacgagctgaagaag
ggcgagataaagcagctcgtccagcagtacgtcgagcgctacccgaccgagctagtcagc
cagctcctcgacaccctcaagcacgtgggcttccacaccgcgacgctcgccggcatctcc
atcggcaagaacgacatcgtcgtccccgagcagaagcgcgagatcctcgagaagtacgag
aagctggtggaggaggtcgaggagcagtgggaggccggcttcatctccgatgaggagcgc
gccgagcgggtcatcggcctgtggacgcaggccaagaacgaggtcgaggaggccatgaag
gccaacctctggaagctcaacccgatctacatgatggccaactcgggcgcccgcggcagc
tactcccagataacccagctggccgggatgcgcggcctgatgaccaacgcgaagggcgag
atcatcgacgagccggtgaagtccaacttcatggagggcctcacggtgctggagtacttc
acctccacacacggggcccggaaggggcaggcggacaccgccctgcgtaccgccgactcg
ggctacctgacccgccggctcgtggacgtcgcccaggacgtggtgatccgggaggaggac
tgcggcaccgacgggtacatcgagctgccgctctacctggaggacgggcagggcgacccg
aacgactccgtggccgcccgctacctggcgcgcgacctcgtcaacccggagacgggcgag
gtggtcgccgaggccggcacggacatcacccggccgctgttcgaggcctggctggaggag
ctgccgcgggagacgaaggtgccggtccgcaccccgaccaagtgcgagaacccgcacggc
gtctgccagaagtgctacgggcgctcgctggccaccaaccgcccggtggacgtgggcgag
gccgtcggcatcatcgccgcgcagtccatcggcgagccgggcacccagctcaccatgcgc
accttccacaccggcggcgtctcgggcgtggaggacatcaccgccggtctgccgcgggtg
gtcgagctgttcgaggcccggcacccgaagggcgaggcggtcatcagcgacatcgacggc
atcgtgagcctggaggagaccgactccgagcggctcgtcagggtcgtggtgaccgcgccc
gacggctccgaggcccgcgagtaccgggtcgagcggcagctgctgcgccccgagatcgtg
gacggcgccgagatccgggcgaacaccccgatcaccgaggggtcgctctacccgcaccag
atcctggagaacgacctgcgctacgggcgcggcaccaccgccaccgagcgctacctggtc
gacgaggtgcagaaggtctaccgggcgcagggcgtggacatccacgacaagcacatcgag
atcatcgtgcgccagatgctccgcaaggtgctcgtggaggagccgggcgacaccaggttc
ctgccggagcaggtggccgaccgcttctcggtgctcgcggagaacgagcgggtcgaggag
gagggcggacgccccgccgagttccacacgatcctgatggggatcaccaaggcctcgctc
gccaccgagagcttcctctcggccgcctccttccaggagaccgcccgcgtcctgaccgac
gcggccatcgagggcaaggtggacaacctcaccggcctgaaggagaacgtgatcatcggc
aagctcatcccggccgccaccggcctgccgaagtaccgcaggctcacggtgaccgtggag
ggctaccgggccgacgacgtcgacgagctggacatagcggcctcctga
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integrated database retrieval system
