Rubrobacter xylanophilus: Rxyl_2433
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Entry
Rxyl_2433 CDS
T00368
Name
(GenBank) Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rxy
Rubrobacter xylanophilus
Pathway
rxy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rxyl_2433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rxy03400
]
Rxyl_2433
Enzymes [BR:
rxy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Rxyl_2433
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rxyl_2433
DNA repair and recombination proteins [BR:
rxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rxyl_2433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
DUF7573
Auto_anti-p27
NFACT_N
DZR
Zn_ribbon_IS1595
Zn_ribbon_TFIIB
Zn_ribbon_SprT
Zn_ribbon_8
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ABG05360
UniProt:
Q1ATB8
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All DBs
Position
complement(2447910..2448746)
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AA seq
278 aa
AA seq
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MPELPETTVISEDIRRLAAGRRVLRAEVFRPDVTNVPPEEFSGRLRGRVLEGTGRRGKLI
VLDFGGVVGLVHLVISGRVLRLPAWTEPDRLNTAVLEFEGGPVLSFAKLWLGYFHLYEPE
RVGEHPLLARLGPDPFSEGFTPGYLARAFRRRAAVKGLLLDQSVVAGLGNIYVDEVLFAA
RVHPLRRADTLSEEEIRAIHAATRKILRRAIELRGTTFDSYHDAFGESGGYQRELRVFAR
AGKPCPSCGARIAKLRVAGRGTHVCPACQSPPTAASGA
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgagctcccggagacgacggtcatctcggaggacatccggcgcctggccgcgggc
cggcgggtgctgcgggcggaggtcttccgccccgacgtgaccaacgtcccgcccgaagag
ttctccggccggttgcgcggccgggtgctggagggcacggggcggcgggggaagctcatc
gtgctggacttcggcggggtggtggggctggtgcacctcgtgatctcgggccgcgtcctg
cggcttccggcctggacggagccggaccgcctcaacacggccgtcctggagttcgagggc
ggccccgtgctctccttcgcgaagctctggctgggctacttccacctctacgagccggag
cgggtgggggagcacccgctcctcgcccggctcgggcccgaccccttctccgagggcttc
acccccggctacctggcccgggccttccggcggcgggcggcggtgaagggcctgctgctg
gaccagtcggtggtcgccgggctggggaacatctacgtggacgaggtgctcttcgccgcc
cgcgtgcaccccttgcgccgggccgacaccctgagcgaggaggagatccgcgccatccac
gcggcgacccggaagatactgcgccgcgccatagagctgcggggcaccaccttcgactcc
taccacgacgccttcggggagtccggcggctaccagcgcgagctgagggtcttcgcccgg
gcgggaaagccctgcccctcctgcggcgcccggatcgcgaagctgcgggtggcgggccgg
gggacgcacgtctgcccggcctgccagagcccgcctactgctgccagcggcgcctga
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