Rubrobacter xylanophilus: Rxyl_2550
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Entry
Rxyl_2550 CDS
T00368
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rxy
Rubrobacter xylanophilus
Pathway
rxy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rxyl_2550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rxy03400
]
Rxyl_2550
Enzymes [BR:
rxy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Rxyl_2550
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rxyl_2550
DNA repair and recombination proteins [BR:
rxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rxyl_2550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Zn_ribbon_SprT
Auto_anti-p27
RNHCP
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
ABG05467
UniProt:
Q1AT11
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Position
complement(2573739..2574599)
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AA seq
286 aa
AA seq
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MPELPEVETIKNDLRGLVVGSRIERAEVREPALVEQPPQEEFVRRLGGARVTGARRRAKH
LVVELDTGEALVFQLKIGGQLLLVPPVEEPEDSVMLVLSLDGGRRLLLRDQTGFSRARLL
GEKELAERLSGLGPEPFSEEFTVRYLKERLGSRRAQIKPLLLDQSLISGIGNIYADEILY
DARLSPRRRASSLSEEEWERLYAAIRSNLAAGIEHRGTTVRLYRDVLGRAGEHQNHLRVF
ERHGGPCPRCGAEVVRERVGGRPTHYCPRCQDGGGSAGDGVQLELE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgcccgaggtggagaccataaagaacgacctgcgcgggctggtggtcggc
tcgcgcatcgagcgcgcggaggtgcgagagcccgccctcgtcgagcagccgccccaggag
gagttcgtccggcggctgggcggcgcgcgcgtgaccggcgcccgcaggcgggccaagcac
ctcgtcgtggagctcgacaccggggaggcgctcgtgttccagctcaagatcgggggccag
ctcctgctcgtccccccggtggaggagcccgaggacagcgtcatgctcgtgctctctctc
gacggcgggcggcggctccttctgcgcgaccagaccgggttcagcagggcccggctcctc
ggcgaaaaagagctcgcggagcggctctccgggctcgggcccgagcccttctcggaggag
ttcacggtgcgctacctcaaagagaggctcggctcccgccgggcgcagataaagccgctc
ctgctcgaccagagcctcatctccggcataggcaacatctacgccgacgagatcctctac
gacgcccggctgagcccccggcgcagggcgagctccctctccgaagaggagtgggagagg
ctttacgccgccatccgcagcaacctcgccgccggcatcgagcaccggggcaccaccgtc
aggctctacagggacgtgctcggtcgggccggggagcaccagaaccacctgcgggtcttc
gagcgccacggcgggccgtgcccccgttgcggggcagaggtggtgcgcgagagggtcggc
gggcgcccgacccactactgcccccggtgccaggacgggggtggttccgcgggggatggg
gtacagttagaattggagtga
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