Rhagoletis zephyria (snowberry fruit fly): 108354202
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Entry
108354202 CDS
T08513
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108354202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108354202
03019 Messenger RNA biogenesis [BR:
rze03019
]
108354202
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108354202
RNA polymerase I system
108354202
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
108354202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
Spt5-NGN
KOW2_Spt5
KOWx_SPT5
Spt5_N
KOW1_SPT5
CTD
KOW7_SPT5
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
108354202
NCBI-ProteinID:
XP_017460881
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
PEGEDLNETKDDDDDEEDEDEDEDSEEEDSEESDGGRPSKRAKTSGKKDKKKKKKKKKKP
RHGGFILDEAEVDDEIEDDEEWEDGAHQEIIDNNKHLDDSSHRDMDSHRRLQMMWNNQKE
DEIEDYYRRKYADQTVAERGYEEGYDVPDDITQQALMPGVKDPNLWMVKCKIGEEKATVL
QLMRKYIAFSKTEEPLQIKSVVAPEGSKGYIYIEAYKQTHVKNAIANVNNLRMGVWKQTM
VPIGEMTEVLKVTKDSSNIKVGQWVRLKRGLFKDDLAQVDYLDTAQNQVHLKLIPRIDYS
RLRGALRNTENEAANAAAAKRKRFKRPAAKLFDQDAVRAIGGEVSTDGDFIIFESNRYRR
GFLYKQFNMNTVLVDGVKPTLSELEKFEEHPEGIEIQLSETTIAEDKGHTFAPGDQVEVC
DGELAQLTGKILSIDGNKITMLPNHEDLNTPLEFPSHELKKYFKLGDHVKVIAGRYEGDT
GLIVRVEDNQIVLFSDLTMHELKVLPKDAQLCQDMATGVDSMGQYQWGDLVQIDQQTVGA
IVRLEKESFQILNMHGKLIHMKHQAILKKRDTKRAVSLDSDSNQIQVKDQVRVTDGPYTG
RQGEIKHLFRGTAFLYSRLVLENGGIFVCKTRHLLLQGASTKSPATLGSGGSSLGGATPG
SSTPSASPMHAGFMSPRILASPAHGGGGGGGGGGNQRGNQQNRGGGGGGGSGGGGPGGSG
GGGYQRSGRDRSDLELIGKTIKITQGHYKGYIGIVKDAIGSTARVELHTTCQTITVDKSR
IARVDAGGRVISGEPGATPSAASTPAYSLTSGRTPLYGSQTPMHSGGRTPMHDGSRTPMH
DGSRTPLHGSLDGSRTPGWESGGGATPGRVGGPSSTGDYDDYLDPSPSPGTGLGGGGGGG
GSGFLAPQTPSYANPDTPQAPYTPGMYSSSDTGYSPYGQTTSPSPGGYHGPGSVGGGSSH
GGGGLSAPSPSPGSSYLAPSPAAYGYSPMMADVNGPMSNLNPQTPGAGMMGGGGGGGGGG
PGDSMGGYGHDWQSADIEVRIKACHDDQDLR
NT seq
3154 nt
NT seq
+upstream
nt +downstream
nt
cccgagggcgaagacctcaacgagacgaaggacgacgacgacgacgaggaggatgaagat
gaggatgaggactctgaggaggaggactccgaggagagcgacggcggccggccatcgaaa
cgcgccaagaccagtggcaaaaaggacaaaaagaagaaaaagaagaagaagaagaagccc
cgccacggaggcttcatcctcgacgaggccgaggtggacgacgagatcgaggacgacgag
gagtgggaggacggcgctcaccaggagatcatcgacaacaacaagcacctcgatgacagc
agccaccgggacatggactcgcatcgacggctgcagatgatgtggaacaaccagaaggag
gacgagatcgaggactactaccggcggaagtacgccgaccagacggtggcggagcgcggc
tacgaggagggctacgacgtgcccgacgatatcacccagcaggcgcttatgcccggcgtg
aaggaccccaatctgtggatggtgaagtgcaagatcggcgaggagaaggcgacggtgctg
cagctgatgcgcaagtacattgccttcagcaagacggaggagccgctgcagatcaagtcg
gtggtggcgcccgagggcagcaagggctacatctacattgaggcgtacaagcagacgcac
gtgaagaacgccattgccaatgtgaacaacctgcggatgggcgtgtggaagcagacgatg
gtgcccatcggcgagatgaccgaggtgctgaaggtgaccaaggacagcagcaacatcaag
gtgggccagtgggtgcggctgaagcggggcctcttcaaggacgacctcgcccaggtcgat
tacctggacacggcgcagaaccaggtgcacctgaagctgattccccgcattgactacagc
cgcctgcgaggggcgctgcgaaatacggagaacgaggcggcgaacgcggcggcggcgaag
cggaagcgcttcaagcggcccgcggcgaagctctttgaccaggacgcggtgcgggcgatc
ggcggcgaggtgtccaccgacggcgactttatcatcttcgagtcgaaccgctatcgccgg
ggctttctctacaagcagttcaacatgaacacggtgctggtggacggggtgaagccgacc
ctaagtgagctggagaagtttgaggagcatcctgagggcatcgaaattcagctctccgag
acgacgatcgccgaagacaagggccacacctttgcgccgggcgaccaggtggaggtgtgc
gacggcgagctggcccagcttaccggcaagattctctccattgacgggaacaagatcacc
atgctgcccaatcacgaggacctgaacacgccgctggagtttccctcgcacgagctgaag
aagtacttcaagctgggcgaccacgtgaaggtgattgccgggcggtacgagggcgacacg
ggcctcattgttcgcgtggaggacaaccagattgtcctcttcagcgacctgacgatgcac
gagctgaaggtgctgccgaaggatgcgcagctctgtcaggacatggccaccggggtggac
tcaatgggccaatatcagtggggcgacctggtgcagattgaccagcagacggtgggggcg
attgtccgcctggagaaggagagttttcagatcctcaacatgcacggcaagctgattcac
atgaagcaccaggcgattctgaagaagagggacacgaagcgggccgtctcgctcgactca
gactccaaccagattcaggtgaaggaccaggtgcgggtgacggacggcccgtacaccggg
cgccagggcgagattaagcacctcttccgggggacggccttcctctactctcggctggtg
ctcgaaaacggcggcatctttgtctgcaagacgcggcacctgctgctgcagggcgcctcc
acgaagagcccggcgacgctgggcagcggtggcagcagcttgggcggcgcaactcctggc
tcgtcgacgccctcggccagtccgatgcatgctggtttcatgtcgccgaggattctcgca
tcgcctgctcatggaggaggaggaggaggaggtggtgggggaaaccaacgaggaaatcaa
caaaatcgaggcggtggcggaggaggcggcagcggtggcggtggccctggaggcagcggc
ggcggcggctaccagcgcagcggccgcgaccgctccgatctggagctgatcggcaagacg
atcaagatcacccagggccactacaagggctacattggcattgtgaaggacgcgattggc
tcgacggcccgtgtggagctgcacaccacctgccagacgatcacggtggacaagagccgc
attgcgcgggtggacgccggcggacgggtgatcagcggcgagccgggcgcgacgccctcc
gccgccagtacgcccgcgtactcgctcaccagcggacggacgccgctctacgggtcgcag
acgccgatgcacagcggcggacggacgccgatgcacgatggttcgaggacgccgatgcac
gatggcagcaggacgccccttcacggaagcttggatggctcccggacgcccggatgggag
agcggaggcggggcgacgccgggcagggtgggcggccccagctccaccggcgactacgac
gactacctcgatccgagccccagtccgggcactgggctgggtggcggcggtggtggtggt
ggcagtggctttctggcgccgcagacgcccagctacgccaatccggacacgccgcaggcg
ccctacacccccggcatgtacagcagctccgatacgggctactcgccctacgggcagacg
acttcgccctctccgggaggctatcatggaccaggttctgtgggcggtggcagttctcac
ggcggcggcggcctgagcgccccctcgccctcgcccggcagcagctacctggcgcccagt
ccggcggcgtacggctactcgccgatgatggccgatgtcaacgggccgatgtccaatctc
aatccgcagacgccgggcgcgggaatgatgggcggcggcggtggaggcggaggcggcggt
ccgggcgactcgatgggcggctacggccacgactggcagtcggcggacattgaggtgcgc
atcaaggcgtgccacgacgaccaggacctgcggg
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