Rhagoletis zephyria (snowberry fruit fly): 108354283
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Entry
108354283 CDS
T08513
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108354283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108354283
03009 Ribosome biogenesis [BR:
rze03009
]
108354283
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108354283
Spliceosome [BR:
rze03041
]
Complex A
U2 snRNP components
U2 related factors
108354283
Complex B
108354283
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108354283
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
90S particles
Helicases
108354283
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_N
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
SRP54
Flavi_DEAD
nSTAND3
ResIII
ABC_tran
AAA_25
AAA_7
AAA_30
T2SSE
AAA_24
TsaE
ATPase
Motif
Other DBs
NCBI-GeneID:
108354283
NCBI-ProteinID:
XP_017460966
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MSKRRIEVGETYNTKSKKDFDTTTSAFSNPTPVAHVAGVASASRQPGTINPYNLKPFTQR
YFNLYKKRITLPVFEYQADFMRLLNEHQSIVLVGETGSGKTTQIPQWCVEFAMSKGKKGT
ACTQPRRVAAMSVAQRVSEEMDVTLGEEVGYSIRFEDCSSPKTVLKYMTDGMLLREAMSD
PMLEQYQVILLDEAHERTLATDILMGVLKEVIRQRNDLKLVVMSATLDAGKFQQYFDNAP
LMNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEDIEGDVLMFLTGQEEIEEACKR
IKRETDNLGTDVGELKCIPLYSTLPPNLQQRIFEPAPPRNANGSIGRKVVVSTNIAETSL
TIDGVVFVIDPGFAKQKVYNPRIRVESLLISAISKASAQQRAGRAGRTRPGKCFRLYTEK
AYKNEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAA
LDDDGNLTDLGAVMSEFPLDPQLAKMLIASCQHNCSNEILSITAMLSGENAHINIKCVL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagacgtatagaagtgggcgaaacgtataacacaaagtcgaagaaagatttc
gatacgactacgtcagcatttagcaatcctacaccagtggctcatgttgctggtgtagct
agcgcttcgcggcagcccggcactataaatccttacaacctgaaaccatttacacagcgc
tatttcaacctatataagaagcgaattacacttcctgttttcgaatatcaagcagatttt
atgcgtctactgaatgaacaccaaagtatagttttggtgggtgaaactggttctggcaag
accacacaaattccacaatggtgcgttgaatttgccatgtcaaaaggaaagaagggcact
gcttgtacacaaccacgtcgtgtggccgctatgtctgttgcgcaacgtgtttctgaggaa
atggatgtcacccttggtgaggaggttggttattccatccgttttgaagattgctcatca
ccgaaaacagtactgaagtacatgacagacggtatgttgttgcgtgaggctatgtccgat
cccatgctagaacaatatcaagtaatattgttggatgaggcccacgaacgtactttggca
acagatattttgatgggtgttttgaaagaagtcatcagacaacgaaacgatctgaaattg
gttgtcatgtctgctactttagatgcaggcaaatttcaacagtatttcgataatgcacct
ttaatgaacgtaccaggtcgtacacatcccgttgaaattttctatacgcctgaaccagaa
cgcgattatttagaagcagctatacgcacagtcatacagatacacatgtgtgaagatatt
gaaggtgatgtattaatgtttttaactggtcaagaggaaatcgaggaggcatgcaaacgt
ataaagcgtgaaacagacaacttgggcacggatgtgggcgaattaaaatgtattcccctt
tactctactttaccgccaaatttgcaacaacgcatttttgaacctgcaccgccgcgtaat
gcaaacggttccattggacgtaaagtagtcgtttccaccaacatcgctgaaacatcgctg
accattgatggtgtagttttcgttattgatcctggctttgccaaacaaaaagtttacaat
ccacgtatacgtgtcgagagtttactaatatcagccatttcaaaggcatcagcccagcaa
cgcgcaggtcgtgctggtcgtacacgtcctggcaaatgttttcgtctgtatacagagaag
gcatacaaaaacgagatgcaggataatacatatcctgaaattttacgttcaaatttaggt
accgtggtattgcagttgaaaaaacttggcattgatgatttggtgcacttcgactttatg
gatccacctgcacctgagacacttatgcgtgctctggaattacttaattatttggctgcg
ctggatgacgatggcaatttaaccgatttgggtgcggttatgtcagaatttcccttggat
ccgcaattggctaaaatgttaattgctagctgtcagcataattgctcaaatgaaatacta
tcaattacggctatgctgtcgggtgagaatgcgcacattaatattaaatgtgtgctttaa
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