Rhagoletis zephyria (snowberry fruit fly): 108354813
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Entry
108354813 CDS
T08513
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108354813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108354813
03036 Chromosome and associated proteins [BR:
rze03036
]
108354813
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108354813
Coactivators
SAGA/TFTC/STAGA complex
108354813
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108354813
STAGA complex
108354813
TFTC complex
108354813
SAGA complex
108354813
SLIK complex
108354813
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR75_2nd
PEP5_VPS11_N
Beta-prop_DCAF4
WD40_like
Beta-prop_NWD2_C
Beta-prop_WDR35_TULP_N
WDR54
VPS8_N
Motif
Other DBs
NCBI-GeneID:
108354813
NCBI-ProteinID:
XP_017461471
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MSNTSANITNGGITPPQEKRDLLALLKLIKKYNLKQTEELLCREANITNQELEEVNDIEI
NTLLTSALVDGHDHQNGLVASGSGGSGNDPEIHEAAYADLRNFVEESLDIYKHELSMVLY
PILVQIYIKLIQGGFAEQARKFVEKCGPDLDHYYREDLQNLLMITKRSDLENNDFVTAME
LDKFVIRMSRDSHSLFKRHIQDRKQEVIADIVAKFLHFDTYEGTARSKSQCDINTGSLVG
EAKRQDNKIRVYYGLLKEVDYQTLTTPAPAMVEEEDDNDPDAPDKPKKKKPKKDPLFSKK
SKSDPNAPASDRIPLPEMKDADKMEKVKALRESSKRVPLNKDSLPSVCFYTILNAHNTVT
CAEISEDSTMMAVGFTDSSIKVWSLTPAKLREMKSAELLKDIDKDAEDINTRMMDDRTGE
ASRTFYGHSGPVYRCAFAPEKNLLLSCSEDTTIRLWSFHTWTCVVVYKGHLFPVWDVRFS
PHGYYFASCSYDKTARLWTTDSNQPLRIFCGHLSDVDCVQFHPNSNYIASGSSDRTVRLW
DVLNGQLVRQMCGHKGPIYSLAFSTCGRYLASGSSDHTVLIWDLSHGQLVASLLRHTGSI
HTMSFSRDGNILAVGGLDCVLTLWDFSKLTEDYLAQTGASSHNPDLNDSETYLLRSFPTK
STPFLALHFTRRNLLLAVGMFKSS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaccagcgccaacattacgaatggtggtattactccacctcaggaaaagcgt
gacctgcttgcgcttctgaagcttataaagaaatacaacctcaagcaaacagaggagctt
ctatgtcgcgaagccaatatcacaaatcaggaattggaggaagtgaatgatattgaaata
aacacacttctaacgtcagctctcgtggatggacacgaccatcaaaatggattggtagca
agtggtagtggtggatccggtaatgacccagaaatacatgaagcggcttatgcagatctg
cgtaatttcgtcgaggagtctctagatatttataaacatgagttgtctatggttctctat
ccaatactggtacaaatctatattaaacttattcaaggaggattcgcagaacaagcccga
aaatttgtggagaaatgtggcccagatttagatcattactaccgcgaagatttgcaaaat
ttattaatgataaccaaaaggtctgatctagaaaataacgatttcgtgaccgcaatggag
ctagacaagttcgttattcgcatgtcacgggattctcattcgctatttaaacgacatata
caagatcgaaagcaggaggtgatagcagatatagtcgcaaaatttttgcattttgatacc
tacgaaggaactgcgcgcagcaagtctcaatgcgatatcaatactggatctttagttggc
gaagcaaaacgtcaagataataaaatacgcgtttactatggtctattaaaagaagttgat
taccaaacgttgacaactcctgcacctgcgatggtggaagaagaagatgataatgatcct
gatgcacccgacaagcctaaaaagaaaaaacccaaaaaagatccgcttttctccaaaaaa
tcaaagtccgatcctaacgcacctgctagtgatcgaattccactgcccgaaatgaaagat
gccgataaaatggaaaaagtaaaagctttgcgtgaatcttccaaacgcgtaccactaaat
aaagattcacttccgtcagtttgtttttatacgatactcaatgcacataataccgttaca
tgtgctgaaatttcagaagactctaccatgatggctgtgggttttaccgattccagcatt
aaagtatggtcccttaccccagcgaaattgcgagaaatgaagagcgcagagttacttaaa
gatatagacaaagatgctgaagacatcaacactcgcatgatggatgataggacaggcgag
gcatcccgtacgttctatggtcatagcgggccggtctaccgctgcgcctttgccccagaa
aaaaatttattgctgtcctgctccgaagataccacaattcgtctgtggtcgttccatacg
tggacatgtgttgttgtttataagggtcatctcttccccgtttgggatgttcgtttctct
ccacacggttattattttgcgtcatgctcatatgataagacggctcgactttggacaacg
gattcgaatcaaccactgcggattttttgcggtcatctatcggatgtggattgcgtccag
tttcatcctaattcgaattatattgccagtggttcaagtgaccgcacagttagattgtgg
gatgtcctaaacggacaattagtgcggcaaatgtgtggtcacaaggggcctatttactcc
ttggcattctctacgtgtgggcgttatttggcatctggttcttcagatcacaccgtcctt
atatgggatttgtcgcatggccaacttgtagcatcactgttacgacatacaggttcaata
catacgatgtccttcagtcgggatggaaatatattagctgttggtggtttagactgcgtg
ctgactttgtgggacttttcgaaactcactgaggattacttggcacagaccggagcatcc
tcacacaatcccgacctaaacgacagtgaaacatacctgctccgctcatttccaaccaaa
tccactcccttccttgcgctgcattttacacgccgaaacttattattagcagttggcatg
ttcaagtcatcctaa
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