Rhagoletis zephyria (snowberry fruit fly): 108355452
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Entry
108355452 CDS
T08513
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03020
RNA polymerase
rze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108355452
09124 Replication and repair
03420 Nucleotide excision repair
108355452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108355452
03400 DNA repair and recombination proteins [BR:
rze03400
]
108355452
Enzymes [BR:
rze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108355452
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108355452
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108355452
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
108355452
NCBI-ProteinID:
XP_017462107
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MMYDDDEMYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPAIDLQAEAQHTSGEIETPPRFLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDITKTKIVEGADPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKSEIRSCLEHSSRPTSTLWVNMM
ARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVVQEQNVALNFIGSRGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQ
KFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVDMLKERDYNNYSWQVLVASG
VVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRIGDQEENFEKPNRQTCQG
MRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDGTTKRFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCE
GLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVVQ
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacgacgatgatgaaatgtatgaggaagaaaatgcggaggaaatctcccatgag
ttgtggcaagaggcctgttggattgttattaacgcatattttgacgaaaagggtttggtg
cgtcagcaattggacagttttgatgaatttattcaaatgtctgtgcagcgcattgtagag
gattcacccgcaatagatttgcaagctgaagcacagcatacctctggtgaaattgaaaca
ccccctcgtttcttactaaaattcgaacaaatctacttatccaagcccacacattgggaa
aaggatggttctccaagtcctatgatgcctaatgaagcacgtttacgcaatctcacatac
tctgccccactgtatgtggatataacaaaaacaaagatagttgaaggtgccgacccagtt
gaaacacaacatcagaaaacattcattggaaagattcctattatgctgcgttcgacatat
tgtctgctatctcagctcacagatcgtgatttgacagagttgaatgaatgcccattagat
ccaggcggctactttatcattaacggctccgaaaaagtgttaattgctcaggaaaaaatg
gcaaccaatactgtttatgtattcagcatgaaggatggtaaatatgcattcaaatctgaa
attcgttcttgtcttgagcacagctccagaccaacgtcaacgttgtgggtaaatatgatg
gcacgtggctcacaaaacataaaaaaatcagcaatcggtcagcgcataatcgctatatta
ccgtacataaagcaagaaattccaatcatgattgtgtttcgagcattgggtttcgtagct
gatcgtgatattttggagcatataatatacgattttgacgatcctgaaatgatggaaatg
gtgaaaccgtcacttgacgaagctttcgtcgtgcaagagcaaaacgtggcacttaatttt
attggttcgcggggtgcacgaccaggtgtaacgaaagacaaacgtattaagtatgcgaaa
gaaattttacaaaaggaaatgctgccccacgtaggagtttccgatttctgtgaaactaaa
aaagcatactttttgggctatatggtgcatcgtctgctattagcttcactgggtcgtcga
gaacttgatgatcgcgatcactatggtaataaacgtttggaccttgctggtcccctattg
gctttcctattccgtggcctctttaaaaatctcatgaaagaagtacgaatgtacacacaa
aaatttattgatcgtggaaaggacttcaacttggaattggccatcaaaaccaatatcatc
accgacggcttacgttactcattggctactggcaattggggtgaccagaaaaaggcacat
caagctcgtgctggcgtttctcaggtgttgaatcgcctaacattcgcatccacattgtca
catttaagacgcgtgaattcacccattggtcgcgatggtaaactagccaagccgcgtcag
ttacacaatacattgtggggcatgttgtgccctgccgaaacacccgagggagccgctgtc
ggcctggtaaagaatttggctcttatggcgtacatatctgtgggttcccaaccctctcct
attctagagttcttggaggaatggtctatggaaaatctcgaagaaattgcaccctcagct
atcgccgatgcaacgaaaattttcgtcaacggttgctgggtcggcatacatcgtgatcca
gaacagttaatggcaactcttcgcaaattgcgacgtcagatggatattattgtttctgag
gtatcaatgattcgtgatattcgcgatcgtgaaataagaatctacacggatgctggacgg
atttgtcgtccgttattaattgtggaaaatggttcgctgttattgaagaaaactcatgtc
gacatgttaaaggagcgtgattacaataactacagttggcaagttttggttgcttcgggt
gtagttgagtatattgataccctggaagaggaaactgtgatgattgctatgtctccctac
gatttgaagcaagacaaagattatgcctactgtacgacctacacgcactgcgaaattcac
ccggccatgattttgggtgtatgcgcatctattattccatttcctgatcacaaccagagt
ccacgtaatacttatcaaagcgctatgggtaaacaagccatgggtgtttacattaccaat
tttcatgttcggatggacactttggcgcacgtactctattatccaatgaagccattggtc
accacgcgctccatggaatatctgcgtttcagagaactaccagctggcatcaattcaata
gtagctattttatgttacactggttacaaccaagaagattctgtcatcttgaatgcttca
gctgtagagcgtggattcttccgctcggttttctaccgttcatataaggactctgaaaac
aagcgcataggtgaccaggaagaaaatttcgaaaaacccaatcgtcagacttgtcaaggc
atgcgtaatgctcattatgacaagttagatgatgatggtattatcgcgccaggtattcgt
gtttcaggagatgatgtcgtcataggcaaaacgattactttgccggaaaatgacgatgaa
ctcgatggcactacaaagcgctttactaaaagggatgcgtccaccttcctacgtaattcc
gaaactggtattgtcgatcaggtgatgttaacacttaatagtgagggctataagttctgt
aagattcgtgttcgttcggtgcgcataccacaaattggtgataagtttgcctcacgtcac
ggtcaaaagggtacttgtggtatccagtatcgtcaagaagacatggcatttacatgtgag
ggactggcacccgatattattattaaccctcacgctattccatctcgtatgacaattggc
catttaatcgaatgtctacaaggcaaacttggttcaaataagggcgaaataggtgatgct
acacctttcaacgatgctgtcaacgtacaaaaaatttccactttcctacaagagtacggc
tatcatctgcgtggaaatgaagtcatgtacaatggtcatactggccgtaaaatcaatgcc
caagtatttttaggacctacttattaccaacgtcttaagcacatggtggacgacaagatc
cactctcgtgcccgtggtcccgtacagattttagtacgtcaacctatggagggtagggcg
cgtgatggtggtctacgtttcggtgagatggaacgtgattgtcagatatctcacggtgcc
gcccaatttctacgtgagcgtcttttcgaagtctccgatccatatcgcgtacatgtttgc
aacttctgtggacttatcgctatagctaatttgcgcaataatacgtttgagtgcaaaggt
tgcaaaaataaaacacaaatatcacaggttcgtttgccctacgctgccaagctgttgttc
caggagctaatgtcgatgaacatcgcaccacggctgatggttgtccagtag
DBGET
integrated database retrieval system
