Rhagoletis zephyria (snowberry fruit fly): 108357488
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Entry
108357488 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DBP2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108357488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108357488
03009 Ribosome biogenesis [BR:
rze03009
]
108357488
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108357488
Spliceosome [BR:
rze03041
]
Complex A
U1 snRNP components
U1 related factors
108357488
Complex B
108357488
Ribosome biogenesis [BR:
rze03009
]
Eukaryotic type
Pre-60S particles
Helicases
108357488
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
Motif
Other DBs
NCBI-GeneID:
108357488
NCBI-ProteinID:
XP_017464052
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MYAGGYAVSGGSPQTNSNGFYGASGVAGGPRPDRPHYQRNAINNGNNAGMPYGGGSALYG
GAQSSYRGGSSSNSMVTSGGPSFYGSGVATPGGYQARGKNPNFVPRYQKPNGGYQPNSGY
HGGMNLGLLSKEERAELQREKAKNPGRNLQIPLWENLQPFKKNFYVPHQNTLNMNEQAVA
ELRNELEITVSGNGIPHPVSTFEECSLPEYTIEEMKRQGFTKPTAIQAQGWPIALSGRDL
VGIAQTGSGKTLAYMLPAMVHIANQPPLQRGEGPIALVLAPTRELAQQIQSVVRDYGHLS
KPEIRHTCIFGGSSKIPQARDLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADR
MLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLKDYISINIGSMNLSANHN
IRQIVEICQESEKPQRVIKLLKEVAPTTNNAANNNNKIIIFVETKIKVEEILQIIRNEGY
TATSIHGDKSQPERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYV
HRIGRTGRCQQLGTAYTLFTPDNGKQARDLISVLEEAGQVPPPALMDLARSSGGNGNGRG
NNNRRWQQQPPHQQRTNPLNYQAGNNANGSYVPKQNHYQQQSSGIYQQHNSASSGGAGGN
WNNRAGVVNSGTGGQYNSQDASGGRTYRPRAPFNAGGPRPMMGYMPPHMQQNNGYIPQQQ
YRPRGQQFIPQQTGNVPRFQQYQKREYNPRXYDKQQQQQNVANGGAAGSVELQQHNGVIN
GAAVTIQQQQQQQQQQHQQQVNVAANIAAAVXAAGGQLGGEYPSNVSTPPAAALYAAPAQ
SPPTAAANTAAYMYDASGVLAAAAAAAAANPYGGLPPHATAAYYPHPHQFAAGVAPATAA
DVLQQQQQQQQQQQQQQRA
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcaggtggttatgcggtgagcggtggaagtccacaaaccaactctaatggattc
tatggtgccagtggcgtcgcaggtggtccgcgtcctgaccgcccccattaccaacgaaat
gctattaacaatggcaacaatgccggtatgccatatggtggtggatctgcattgtatggt
ggcgcccaaagctcttatcgtgggggcagcagctctaattcgatggtgacaagtgggggt
ccgagcttctatggcagtggtgttgccactcctggaggctaccaagctcgtggtaaaaat
ccgaatttcgtaccacgttatcaaaaaccaaacggcggctaccaacctaatagcggctac
cacggtggtatgaatttaggtttattgagcaaggaagagcgagccgaacttcagcgtgaa
aaagctaaaaatcccggtcgtaacctacaaatcccactttgggaaaatttacaacctttc
aagaagaatttctatgtaccacatcaaaacacattgaatatgaatgaacaagctgttgct
gagttacgcaatgagttggagataacagtttcgggaaatggtattccccatccagtatcg
acattcgaggaatgttctctgccagaatatacaattgaagagatgaagcgccagggcttc
actaaacccactgctattcaagcacaaggttggccgattgctctttctggtcgtgactta
gttggtatagcacagaccggttccggtaagacgttggcatatatgttgcctgctatggta
catattgcaaatcagccaccattacaacgtggagagggtcccatagcattggtattggcg
ccaacacgtgaattggctcagcaaatacaatctgttgttcgtgattatggacacttgtct
aaacctgaaattcgccatacctgtattttcggtggttcttcaaaaataccgcaagctcgt
gatttggaaagaggcgttgaagtcattatcgctacaccaggccgattaatcgatttctta
gagaatcggaacacaaacttgcaacgttgtacctatttggtattggacgaagctgatcgc
atgctggacatgggtttcgagccacaaattcgtaaaataatagagcaaattagacccgat
cgtcaagtggtaatgtggtccgcaacttggcccaaggaagtacaggcactggccggtgat
ttcttaaaggattatatttctataaacattggctcgatgaacttatcagctaatcacaat
attcgacaaattgtagaaatttgtcaagaatctgagaagccacaacgggttatcaagttg
ctaaaagaagtagcacctaccactaataatgctgctaacaataataacaagattattata
tttgtcgaaactaagataaaggtcgaagaaatattgcaaataattcgcaatgaaggttac
accgccacttccattcatggtgataagtcccagcctgaacgtgattcagtgttgaaagat
tttcgcaacggcaaatcgaatattttaattgccaccgatgtggcctcacgtggtctagat
gtagaagatttgcagtatgtcatcaattacgattatccaaactcatctgaaaactatgta
catcgtattggacgtactggtcgttgccagcagttaggcacagcttatactttatttact
cctgacaatggaaaacaggcacgcgatctaatttctgtgttggaggaggccggtcaggta
cctccaccggctttaatggatttggcacgctcttcaggcggaaatggtaatggtcgaggc
aacaataatcgccgctggcagcaacagcctcctcatcagcaacgcaccaatccactaaat
tatcaggcgggcaacaacgctaacggttcgtatgtcccgaaacagaatcattatcagcag
caaagcagcggcatatatcagcaacataacagcgctagcagcggtggcgctggcggcaac
tggaacaatcgtgcaggtgtggttaacagcggcactggtggccagtacaatagccaagat
gcaagcggcggccgcacttatcgtccacgtgcaccgttcaacgcgggtggtcctcgccct
atgatgggctatatgccaccacatatgcaacaaaataacggctacataccacaacaacaa
tatcgaccacgtggtcaacaattcattccacaacaaactggtaatgtacctcgtttccag
caatatcaaaaacgcgaatataatccacgcnactacgacaaacagcagcaacaacaaaat
gttgccaatggcggggctgctggtagtgttgagcttcaacagcataatggtgttataaat
ggcgctgcagttaccattcagcagcagcaacaacaacagcagcagcaacaccaacaacag
gtgaatgtagctgccaacatagcagctgctgtcngcgctgccggcggtcaattggggggt
gagtatcccagcaatgtatcgacaccaccggctgcggcattatatgcagcacctgcacaa
tcgccgccgactgcagctgccaataccgctgcttatatgtatgatgctagtggtgtttta
gcagcagcagctgctgccgctgctgccaatccatatggaggcttgccaccacatgccacc
gctgcttactatccacatccacaccagtttgccgctggcgtggcaccggccacggctgcc
gatgttttgcaacagcagcagcagcaacaacaacaacagcagcagcagcaaagagcgtaa
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