Rhagoletis zephyria (snowberry fruit fly): 108358048
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Entry
108358048 CDS
T08513
Name
(RefSeq) protein suppressor of forked
KO
K14408
cleavage stimulation factor subunit 3
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108358048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108358048
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108358048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
NRDE-2
Elongin_A
Motif
Other DBs
NCBI-GeneID:
108358048
NCBI-ProteinID:
XP_017464664
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MSVRDQIKIDIEWGHERLVRSQQVVEMRPYDIESWSVLLREAQTRPVNDVRSLYESLVNV
FPTTARYWKIYIEQEMKGRNFERVEKLFQRSLVKILNIDLWKLYLTYVKETKAGLSTHKE
KLAQAYDFALEKIGMDLHSFSIWQDYIHFLRSVEAVGSYAENQKITAVRRVYQKAVVTPI
VGIEQLWKDYIAFEHNINPIISEKMSLERSKDYMNARRVAKELEILTKGLNRNLPAVPPT
LSKEETKQVELWKKFIAFEKSNPLRTEDTALITRRVMFATEQCLLVLTHHPAVWHQAAQY
LDQSAQGLAEKGDTQAAKIFGDECANILERSISGVLNKNALLYFAYADFEEGRMKYDKVH
AMYNKLLSIPDIDPTLAFVQYMKFARRAEGIKSARAVFKKAREDVRSRYHVFVAAALMEY
YCSKDKDIAFRIFELGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLTPTL
SVDVWNRFLEFESNIGDLSSIVKVERRRSAVLENLKEYEGKETAQLVDRYKFLDLYPCTT
VELRSIGYTENVGIMTNKLAGATTDKTDEPDFEQAVTLPRPDFSQMIPYKPKVNAHPGEH
PLAGGTFPQPPALASLCAQLPPPVSFRGPFVSIEMLFDIFNRIKLPDAVPLPVGDHGCDT
KLFDLAKSVHWIVDDSICTGDAGSLKRRRMLPGGDDSDEEAQAPAPPANDIYRLRQQKRF
SK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtacgcgatcaaataaaaattgatatagaatggggtcacgaacgcttggtgcgt
tcgcaacaggttgtggagatgcgaccctacgatatcgaatcgtggtccgtgctgctgcgt
gaggctcaaacgcggccagtcaacgacgtacgcagcttatatgaatcactggtaaatgta
tttcctacaaccgcacgatactggaaaatctacattgagcaggaaatgaaaggacgcaac
tttgaacgcgttgaaaaattgttccagcgttcgttggtgaaaattctaaatatcgacttg
tggaaattgtatctgacttatgtaaaagagactaaggctggcttaagcacgcacaaagaa
aaacttgcacaagcctacgacttcgccttggagaaaataggtatggacttgcactcgttt
tcaatatggcaggactacattcatttcctgcgcagcgttgaggctgttggtagttatgcc
gaaaatcagaagataacggccgtgcgtcgtgtgtatcagaaggcggtagttacgcccata
gtcggcattgaacaattatggaaagactatatcgcttttgagcacaatattaacccaata
atatcagagaaaatgagtttggagcgttccaaggattatatgaatgctcgacgcgttgcc
aaggagcttgaaatacttaccaaagggctgaatcgcaatttaccggccgttcccccaacg
ctctctaaagaggaaaccaaacaagttgagctgtggaaaaaatttattgccttcgagaaa
tcaaatccgttgcgcacagaggatacagcgctcattacacgccgtgttatgtttgctact
gaacagtgcctgctggtgctcacccatcatccagcggtgtggcatcaggcagcacagtat
ctcgatcaaagcgctcaagggttggcagaaaaaggcgacacacaagctgctaagattttc
ggcgatgaatgcgccaatatattggaacgttctatcagcggcgttttgaataagaacgct
ctactttatttcgcttacgctgactttgaggagggacgcatgaaatacgataaagtgcat
gccatgtacaataagttgctgtctattccggatattgatccaacactggcttttgtgcag
tacatgaagtttgcgcgccgtgcggagggtatcaaatcagcgcgtgcagtcttcaagaaa
gcgcgtgaagatgtacgctcacgataccatgtttttgtggccgcagcgctaatggaatac
tactgttctaaggataaggatattgcttttcgtattttcgaactgggactaaagcgcttt
ggtggaagcccagagtatgttatgtgctacattgattacttatcacatttaaatgaggat
aacaatacgcgtgtgcttttcgagcgtgtactctcatcaggcgggctgacaccaacgctc
agtgttgatgtgtggaatcgttttctggaattcgagtcaaatataggcgatctgtcgagt
attgtaaaagtagagcgtcgtcgcagcgccgtgctggagaatctgaaagagtatgaaggt
aaagagactgctcagctggtggatcgttataaatttctggatttatatccttgcacgacc
gtcgagctgcgttcgattggctacacagagaatgttggcatcatgacgaataaattggcc
ggcgctacgactgataagacagatgagccagacttcgagcaggcggtgaccttaccgcgt
ccagacttctcacaaatgataccctacaaaccgaaggtgaatgcgcatcccggtgaacat
ccactggcaggcggcaccttccctcaaccgccggcattggcctcattatgcgcacagcta
ccgcctccagtttccttccgcggtccattcgtctctattgaaatgctgttcgatatcttc
aaccgcataaagctgcccgatgccgtgcccctgcctgttggcgatcatggttgcgatacg
aaactcttcgatttggccaagtcagtgcactggattgttgatgacagcatttgcaccggc
gatgcgggtagcctcaagcgtcgacgcatgttgccgggcggggatgacagcgatgaagag
gcacaggcgccagcgccacccgctaatgatatctatcgactgcggcagcaaaaacgtttc
tccaaataa
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