Rhagoletis zephyria (snowberry fruit fly): 108358197
Help
Entry
108358197 CDS
T08513
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108358197
03036 Chromosome and associated proteins [BR:
rze03036
]
108358197
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108358197
Chromosome and associated proteins [BR:
rze03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108358197
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
S1
Tex_central_region
Spt6_S1
SH2
HHH_9
Tex_YqgF
HHH_3
Tex_N
OB_RRP5_4th
DUF2924
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
108358197
NCBI-ProteinID:
XP_017464872
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MSRPLSKHPYATPEYPQNFIAEFRNKLKCYQDDEERLREELKDLIDDNPIEEEASDAEDS
DTGSKKRKKHDDELDDRLEDDDYDLIEENLGVKVERKKRFKRLRRLQEESDGEEDHVDEG
LAREAIAEQLFDEDDENAERRSERSNKEQETYEEEEESDSDADDFIVDDEGRPIAEKKKK
RRPIFTDASLQEGQDIFGVDFDYDDFAKYEEDEYEDESEGDEYDEDVGEEARGRSKKKTQ
KKKVSKKTIFDLYEPSELKRGHFTDLDNEIRKTDIPERMQLRQVPVTPVAEGSSELDDEA
EWIYKQAFCKQNVSQQESLETSRDKHKKPISSVGKIKQTLEFIRNQQLEVPFIAFYRKEY
VKPELNCEDLWKIYYYDERWCQLFNRKNKLKLLFENMRAFQKSNDSDNPTPDGIRFIQDE
DLERLKEVQTMEELKDVHMHFLLHYSHEIPRMQDENRKTEKEQKRLAREELRQNLQEGEE
IHQNFDDDIEESEEQLKQAKDSGPYAMCRKAGICGFAKKFGLTPEQFAENLRDSYQRHEV
AQESAGPSDVAKQYLCPKFVTVEEVLHATKFVVARQLSREPLLKKCVREVFFERAKIDVR
PTKKGLKEIDENHPCYTMKYVTKKPVKDLAGEQFLRLSMAEEDKLIEITISDHIDGNTSN
SYIDEAKQLYQRDEFSKVVQEWNSLRAECVELALNIMVIPDLRKELKTVLLNEAKQFVLK
SCCLKLSNWLKVAPYRPDIADEYMFDDWSYAKGIRAMAIAYVPDYSQAAFCAVTTVEGDV
SDYLRLPHILKRKNSYRLDEKALKLSDLKNLKEFIQNKKPHVIAIGGESREAQMLRNDVH
EIVKELSDEDQFPMISVEIVDNELAKIYANSKKGASDFKEYPDLLKQAVSLARKMQDPLV
EYSQLCSADEEILCLRYHSLQEQLSKEDMLEHLYIEFINRTNEVGLDINLTVQNSYTQNL
VQFICGLGPRKGQALIKLLKQSNQRLENRTQLVTLCHLGPKVFINCSGFIKIDTSSLGDS
TEAYVEVLDGSRIHPETYEWARKMAIDAMEYDDEEANPAGALEEILESPERLKDLDLDAF
AVELERQGFGNKSITLYDIRTELNALYKDLRTLYRSPNSEELFDMLTKETPESFYVGKMV
LATVTGISHKKPQGDQLDQANPVRNDETGHWQCPFCLKDDFPELSEVWNHFDAGACPGQA
TGVKLRLDNGLSGFIHIKNLSDRHVLNPEDRVQIGQAIHVRIIKIDVERFSVDCSSKSSD
LMDKNHEWRPRKDVFYDYEAEEKDNRKENEQKQVRSKQQYVKRVIIHPSFHNKSYAEVVK
IMENMDQGEVIVRPSSKGSDHLTVTWKVTTGIYQHIDVREEGKENAFSLGQSLWIGNEEF
EDLDEIIARHVNPMASCARELLTYKYYRDTGGGVKDKMEELLKEEKAKDSKKIHYFISAS
KSYPGKFLLSYLPKTKCRHEYVTVIPEGFRFRGQIFDSLNSLLKWFKDHYSDPVIANTPT
STPNASGSIRTSGYDTPRGNLDLRTEQHISQSSAIHTPHYPNTPGYQGGYVNTPYTPSGQ
TPFMTPYNTPYASQTPRYTHNTPSPNSSSSHINYHRSANTKQIKDNSLYQGISPRMELEQ
SKNHIYSSQKESAEWQMASESWARRKPVHSAPHMPRTVGNDFSRSANYSVPTTNDMSSAF
NQLSDERFRLRNHKSPRSIRSTPRTNTSPHSMNLGDSTPLYDEN
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtccgctatcgaaacacccatatgcaacaccagaatatccacaaaacttcata
gctgaatttcggaataaattaaaatgttaccaagatgacgaggagcgtctacgggaagag
ctaaaggacttgattgatgataatccaatcgaagaagaagcgagcgatgctgaagattct
gatacaggatcgaagaaaaggaaaaaacacgatgatgagttagacgatcgtttggaagat
gatgactatgacttgattgaagagaacttaggtgtgaaagttgaaagaaagaaacggttc
aaacggcttagacgccttcaagaagaaagtgacggcgaagaagatcatgttgacgagggc
ttggccagagaagctattgcggaacaacttttcgatgaagacgacgagaacgcagaaaga
cgatctgaacgtagcaataaagagcaagagacctatgaagaagaggaagaatctgattca
gatgcagatgattttattgttgacgatgaaggccgcccaatagcagagaagaagaaaaag
cgaagaccaatatttaccgacgcgtcattgcaagaaggtcaagatatattcggcgtggat
tttgattacgacgattttgccaaatatgaagaagatgaatatgaagatgaatccgaaggt
gatgaatacgacgaagatgtcggtgaggaagctcgaggaaggagtaaaaagaaaacacaa
aaaaaaaaagtttccaagaaaacaatttttgatttatacgaaccgagtgagctgaaacga
gggcatttcacagacttggataatgaaattcgaaaaactgatataccagagcgtatgcag
ttaaggcaagtaccagttacgccggttgccgaagggtcatctgaattagacgatgaagct
gaatggatatacaagcaggctttttgcaagcaaaatgtctctcagcaagaatccttggaa
acaagtcgtgataaacataaaaagccaataagttctgttggaaaaattaagcagacctta
gagtttattagaaaccagcaactggaggtacctttcatagctttttacagaaaggaatac
gtcaaacccgagctaaattgcgaagatttatggaagatatattattatgatgaacgatgg
tgtcagctttttaacagaaaaaataaattgaaactgttatttgaaaatatgcgtgccttt
cagaagtcaaatgatagcgacaatccgactccagacggtattcgatttattcaagatgag
gatttagagaggttaaaggaggttcaaacaatggaggagttgaaagatgttcatatgcat
tttttgcttcattactcgcatgaaatacccagaatgcaagacgaaaatagaaagacagaa
aaagaacaaaaacgactcgccagagaagaactacgacaaaacctccaagaaggggaggaa
atacatcaaaattttgatgatgatatagaagagagtgaagagcagctgaaacaagcaaaa
gattcaggtccctacgcaatgtgccgcaaagcgggtatatgtggatttgccaaaaagttt
ggtttaacacctgaacagttcgctgaaaatttgagagacagttatcagcggcatgaagtt
gcccaagagtctgctggcccatcggacgtagcaaagcagtatttatgccccaaatttgtt
actgttgaagaagtattacatgctactaaattcgttgttgctcgccaattatccagagaa
cccctcctcaagaaatgtgtacgtgaggtcttctttgaacgcgctaaaatagacgttcga
ccaaccaaaaaaggattgaaggaaatcgatgagaatcatccttgttatactatgaaatat
gtcacaaaaaaacctgttaaggatttggctggcgaacaatttttaagactttctatggcc
gaagaagataagttaatcgaaataacaatatctgatcatattgatgggaatacttcgaat
tcgtatattgatgaagctaaacaactttaccagagagatgaattttcaaaagtggttcaa
gagtggaactcgttacgagccgaatgtgttgaacttgcattaaacattatggttattcct
gatttgcgcaaggaattgaaaacagttcttcttaatgaagcaaaacagttcgttttgaag
tcatgctgcttaaagttatcaaactggttaaaagtagcaccatatcgcccagacattgct
gatgagtatatgttcgacgactggagttatgctaagggaatccgagcaatggctatagca
tatgttcctgattattcacaagctgctttttgtgctgtaacgactgttgaaggagatgtc
agtgattatttgcgcttaccacacattctaaaacgcaaaaactcttaccgtttagacgaa
aaagctttaaaattgtctgatttaaaaaacttgaaagaatttattcaaaataaaaagccg
catgttatagcaattggaggtgaatccagagaagcgcaaatgttgagaaacgacgtccat
gaaatagttaaagaactatcagacgaagatcaatttccaatgatttctgttgagatagtg
gataatgaacttgctaaaatttatgctaattcaaaaaagggagcatcagactttaaggaa
tatccggatttattaaagcaagcagtatcattggcacgaaaaatgcaggacccgcttgtt
gaatattcccaactgtgcagtgctgatgaagaaattttatgcctacgataccattccctg
caagaacaattatcaaaagaagatatgttagaacacttgtatatagaattcataaatcgc
acaaatgaggtgggcttggacataaatttaactgtgcagaactcttacactcaaaatttg
gtgcaatttatttgtggattaggaccacgcaaaggacaagcattaataaaactacttaaa
cagtcgaaccaaagacttgaaaatcgtactcaattagtcacactgtgccacttaggtcca
aaggtatttataaattgttccggttttattaaaatagatacaagttctcttggtgatagc
actgaagcctatgtagaagttctagatggctcccgaatacatccagaaacctacgaatgg
gccagaaaaatggctattgatgcaatggaatatgatgacgaagaagcaaaccctgctggt
gctctagaggaaatcctagaatccccagaaagacttaaggatctggatttagatgcattt
gctgtagaattagaaaggcaagggtttggtaacaagagtattactctgtatgacattcgt
acagaactcaacgccttatacaaagatcttagaacgctttatcgctccccaaactctgag
gaactgtttgatatgctgactaaagaaactccagagtcattttatgtaggaaaaatggtt
ttggctacagttactggaatatctcataagaaacctcaaggagatcaacttgatcaagca
aatcctgtaagaaacgatgagactgggcactggcagtgccccttttgtttaaaagatgac
tttcctgagttgtccgaagtatggaatcactttgatgctggtgcttgccctggtcaagcg
actggagtcaaacttcgtttggacaatgggctctccgggtttattcatattaaaaatctg
tccgataggcacgttttgaatccagaggaccgtgttcaaataggtcaagcgatacatgtg
cgcattattaaaatcgacgtagaacgattttcggtcgattgctcttctaaaagctctgac
ttaatggataaaaaccatgagtggagaccgcgaaaagatgtattctatgattacgaagca
gaggagaaggataatagaaaagaaaatgagcaaaagcaagtgagatcaaaacagcaatac
gtaaagcgagtaattattcacccttctttccataacaaatcctatgcagaagttgtgaaa
attatggaaaatatggatcaaggggaagtaatcgtacggccttcaagcaagggttccgat
catctcactgtgacatggaaggttacaactggaatttatcaacacattgacgtccgagaa
gaaggaaaagaaaatgcttttagtttgggtcaaagcttgtggattggcaatgaagaattt
gaggacctggatgaaattattgccaggcatgtaaacccaatggcatcatgcgcaagagaa
cttcttacatataaatattatagagacacaggtggcggtgttaaagataaaatggaagaa
ctacttaaagaggaaaaggctaaagactctaagaaaatacattatttcatatcagcctca
aagtcttatccagggaaatttttgctatcgtatttacccaaaacaaaatgtaggcatgaa
tatgtaacggttatcccggagggtttccgttttagaggacaaatttttgattcactgaat
tcactcttaaaatggtttaaggatcattactcagatcctgtcatagcaaacactccgact
tctacaccaaatgcttcgggcagcatcagaacatcaggatatgatactcctagaggaaac
ctggatttaagaactgagcaacatatatcacaatcatcagcaattcacaccccacattat
ccaaatactcctggatatcaaggagggtatgtaaatactccgtatactcccagcgggcaa
acgccatttatgacaccatacaatacaccatatgcttcacaaactcctcgatacactcat
aatacaccaagccctaattcctcctcttcacatataaactatcatcgttcagcaaatacc
aagcaaatcaaagataatagtttgtatcaaggaatttcccctagaatggaattagagcaa
agcaaaaatcacatttattcttctcaaaaagagagcgccgaatggcaaatggcgtcagaa
tcatgggcaagacgtaaaccagtgcattccgcgccacatatgccacgaacagttggaaac
gatttttcaagaagcgcaaattactctgttccgacgactaatgatatgtcatctgcattt
aatcagctttcagatgaacgcttccgactaaggaaccataaaagtccacgatctattcgc
agtacgccccgtacaaatacttccccccattcgatgaacttgggcgattctacgcctcta
tacgacgagaattga
DBGET
integrated database retrieval system
