Rhagoletis zephyria (snowberry fruit fly): 108358228
Help
Entry
108358228 CDS
T08513
Name
(RefSeq) helicase SEN1 isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108358228
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108358228
5.6.2.5 RNA 5'-3' helicase
108358228
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108358228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
FHA
Viral_helicase1
AAA_19
Yop-YscD_cpl
AAA_30
UvrD-helicase
SLFN-g3_helicase
AAA_16
Helicase_RecD
AAA_22
NPHP3_N
ResIII
UvrD_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108358228
NCBI-ProteinID:
XP_017464920
LinkDB
All DBs
Position
Unknown
AA seq
1827 aa
AA seq
DB search
MSDMANRVLSSWLLERKVIGDRLRLLIGVTQVGRQPGLALCIDSGFVSRKHAEITVDQDG
RIVLKDLNSANGTFVNGIKIKNGEIVLKANDCIGVGVTDDSEPNLKHPIYNLIYAPMPGI
VPIAQAIDNTKDESIQIGNKRKAQQESPELPSTSSAISTSDQQATKYTTAVTTSDLKSDN
IIGSSDTNQISSIATNEVVCTKSTTEVKYDKISESKAKPASLSSKLPTLFSGQIIILSDD
EDDVVRSIKEECKQSSNIKDYEDSIAMKDVQPSGQNNSNEEPPNRIGIHKTNNATPDIPN
NAAVHEPILPEVKREFVRSCTENVVEIFGGTDDVILESVKEINPLLYSRLNGKKTNKMLY
DGDSIDLLSDNEDDDPNIAHNVETFGELLPAAEYNKHSEKADQTKNIAVENELMQNASLK
KSPNVFDNSLNSSNGDEQRNCIIEHADIPEDNRNLEPSTVNSAKAPDELAEFVDMDDDML
FSQILLNDIKSEMMADNNEAEFADEDHPYDVIRKQSQENLIDTHIKKEIVDNEQTNSAAI
PVEQKLKDPEIGNDVWITIEDDDEYYDEEFEHKVSDWSSKLLSQTMNMSQVFEFQNDKAE
NLDDNDENAEGKEDQGLDCASEDLDDFFNEALVDDVIATLAQKTGQTKSDSKSSPLEQEM
SKDSYEYDRSKELVHQKDKIKSIEDYKEAPVEIKTTRELNDEPEGCDLKASTSSKPTVAD
SKKTDTSKEKIKVSKKEVIKPVKRLHHPPSVIDAPNLPKHKGKHRGVSAESRSIASSTKE
VRTKAAAFSGQLKEERYMDELKRKWLGKPVDERRREIEKKRLIRESRKERLKELADKQSA
DTSKELLKRKHASETEVVEKKKAKVKITTMNRGALLAEDIEASKKNVELYRIPKIKRCSS
ESTKPHKESSTSATVTTPKSNRPKAVDAFAQEMSKLDKIISRRISSSSNRKTSRSSSTEE
NRNGSLPTEAKPCNAPARKTNKITFASMQKNFSETKKNQELLQRFASHRSCLTNVIRRDA
DKERLKKRVRFNETPIVYYIERVSGANKRVDRKDILPSPTCQDRAHMVRMAYAMVDKTAQ
IISQILGWSNEWLVNRNAQVDAASDILLPMPNQFTTFNHYKSIIIPLMKLEFMSVLEREK
SRCKSKTFIVSAEQVTPYLDRFIIIGRCAGTNSSESKSELVILEWGKFTTFAYMSSKRFG
FNYTTIVYEVLANDLSLEELRANSNNPIKVRPMIDVVRVEFGAFNAVYQLEQSPLLAQIL
DPMQLCKRKPFTQCNIQYNGCDDLNARQKEVLIRTYRRAIEPTPNITLIQGPPGTGKSCV
IANLVHQLLYGNEIRILDQKVLICAQSNAAVDVIAEKLFNMGQKKLPDVQFRLIRFGLME
RISPKVRHATLPKIIERNQIRKLKVACTNLQIDDKIDIKEYLRNEIIQIEADIEHMKQKN
VKGTAQEEELIAKVRQVQLMRNIVNGVLRPEDERSLYNWHLKNANVVCTTLSSCVKLSQY
VNYFDVCIIDEATQCTEPWTLMPLKFGINTLVLVGDTQQLPATVLSKKASDFGLGTSLFT
RIQRCIESVNLKNAANGLTDEEKIFLSDSNDIIFSLQTQYRMHPEICKWPNSYFYKNELI
DDPKTHQFKTPLKPFSVLNLTYTQDENCHRGQIANELEAKFVARLVKTLDGYIPMKYNSY
GVITPYAQQRGALEKALRNYGFLNVMVNTIDSYQGMECDVIIISNARTTGIGFLANYQRL
NVALTRPKKCLILCGNFKNLEAVPAWRSLLASARERKLYHELSADCMDDMHRSVIPKIKI
SKPTVTADTATATTRKELLAVVPTLNQ
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatatggccaatcgtgtcctctcctcctggttattggagcgtaaggtgattgga
gatcgcctaagactattgataggtgtaacgcaagttggtcgtcagccaggattggctcta
tgtatagattctggttttgtttcacgcaaacatgcagaaattactgtggaccaagatggg
agaattgtcctgaaagatctgaattcagcaaatgggacgtttgtgaatggaattaaaata
aaaaatggagaaatagttttaaaagcaaatgattgcataggagttggagtcaccgatgat
tcagaacctaatctaaagcatccaatatataacttgatatatgctcctatgccaggaatc
gtgcccattgctcaggcaatagacaatactaaggacgaaagtatacaaattggtaataaa
agaaaagcacagcaggaatcgcctgaattgccttcaacatcttccgcgatttctacatca
gatcaacaggcaacaaaatatacaactgcagtaacaacttcagatttaaagtcagataat
atcattggatcgtcagatactaaccaaatatcatcaattgcaaccaacgaagtggtctgc
accaaatcaacgactgaagtaaaatatgataaaatatcagaatctaaagctaaaccagct
tcactctcatcaaaattgccgacacttttttctggacaaataattattttgagtgacgat
gaagatgatgttgtacgctcaatcaaagaagagtgtaaacaatcttccaatatcaaggat
tatgaagactctatagccatgaaggatgtgcaaccttctggacaaaacaattcaaatgaa
gagcctccaaatcggattggcatacataaaacaaataatgccaccccagatatacctaac
aacgctgccgttcatgaacctatattaccagaagtgaagcgagaattcgtacgctcatgt
acggagaatgtagttgaaatctttggaggaactgatgatgtcattcttgagagtgtcaaa
gaaataaatcctttgctatattcaagacttaatggtaagaaaacgaataaaatgctttac
gatggagatagtattgacttgctaagtgataatgaggatgacgatcctaatattgcgcac
aatgtagaaacgttcggtgaactattgccggcagcagaatacaacaaacattctgaaaag
gccgatcaaacaaaaaatatagctgtggaaaatgagctaatgcaaaatgctagtttaaaa
aaaagtcctaatgtttttgataattcacttaacagctctaatggcgatgagcaaaggaat
tgtatcattgagcacgcagatattccggaagataatcgtaaccttgagccttcaacggta
aattctgcaaaagctccagatgaattggctgagttcgtcgatatggatgatgatatgttg
ttttcacaaattttattaaacgacattaagtccgaaatgatggctgataataatgaagct
gagtttgctgatgaagaccacccctatgatgtgattagaaaacaaagtcaagaaaaccta
atagacacccatattaaaaaagagatagttgataacgaacagacgaactcagctgcgatt
cctgtagaacaaaaactaaaagatcctgagataggaaatgatgtatggattacaatagaa
gatgacgatgaatattatgatgaagagttcgagcataaggtatctgactggagctctaaa
ttgctatcacaaacgatgaatatgtcacaggtcttcgaatttcaaaatgataaagcagaa
aatttagatgataacgacgaaaatgccgaaggcaaagaggatcagggtttagattgtgcc
agcgaagatcttgatgattttttcaacgaggctcttgtggatgacgtaattgcgacatta
gctcaaaaaactggccaaactaaaagcgattcaaagtcgtcaccattagagcaggaaatg
tcaaaagacagttacgaatacgatagaagtaaagaacttgtacaccaaaaagataaaatt
aaatcaattgaggactacaaggaagcaccagtggagataaagacaactcgtgaattaaac
gatgaacctgaaggttgtgatctaaaagcgtccactagtagtaagccaacggtcgctgat
agcaaaaaaactgatacttctaaagaaaagataaaggtgagtaaaaaggaggtgatcaaa
ccagtaaaacgcttgcatcacccaccatctgtaatcgacgccccaaatttacctaagcat
aagggaaaacacagaggagtttctgcagaatcgcgttcaattgcatcatccacaaaagag
gttcgcacaaaagccgcagccttcagtggtcaactgaaagaagaacgttatatggatgaa
ctaaaaaggaagtggcttgggaagccagtagatgagagacgtagggagatcgagaaaaaa
cgtctgattagggagtctcgcaaagagcgcttaaaagaacttgctgacaagcaatcagca
gacacttcaaaagaattgctaaaacgcaaacatgcatctgagactgaagttgttgaaaag
aaaaaagccaaggttaaaatcactacaatgaatcgaggtgctcttctagctgaggatatc
gaagccagtaagaagaatgttgaactgtacagaatacctaaaataaagagatgttcatca
gaatcgacaaagccacacaaagagagctcaacaagtgctactgtaacaacgcctaaatct
aatcgacccaaagctgtggatgcatttgctcaggagatgagcaaattagataaaattatt
tcccgccgtatatctagtagtagtaacaggaaaacatcgagatcgtcctcgaccgaagaa
aacagaaatggaagtctaccaacagaagcgaagccttgtaatgcacctgcgcgtaaaact
aacaaaattacatttgcttctatgcaaaaaaatttttccgaaacaaaaaaaaatcaagag
ttattgcaaagatttgctagtcaccgttcctgcctaacaaatgtgatacgacgcgatgcc
gacaaggaacgactgaagaaacgtgtgcgctttaatgagacaccaattgtatactacatc
gaacgcgtaagcggcgccaataagcgagttgatcgaaaagatatattgcctagtccaact
tgtcaagatcgtgcgcatatggtgcgtatggcgtacgctatggttgataagactgcacaa
ataatatctcaaatattgggctggagcaatgaatggctcgtaaatcgtaatgcgcaagta
gacgctgcaagtgacattttattgccgatgccaaatcaatttactacgtttaatcattat
aagagcataattataccgttaatgaaattggagtttatgagtgtacttgagcgtgaaaaa
agtcgatgtaaaagtaagacgtttattgtctccgccgagcaagtaactccttatttggat
cgtttcataataatagggcgctgtgccggcacaaacagctctgaatccaaaagtgaactc
gtaattttggaatggggaaagtttacaacattcgcatatatgtcttcaaagcgatttggg
tttaattacactaccattgtgtatgaagtgcttgcaaatgatttgtctttagaagagctg
cgtgccaactccaataatccaattaaagtccgtccaatgatagatgttgtacgagtagaa
tttggcgcctttaatgcggtataccaattggagcaatccccactgctcgcgcagatactc
gacccaatgcagttatgcaaacgcaaaccgtttacgcaatgcaacattcaatataacggc
tgtgatgatttaaatgctcgtcaaaaggaggtattgatccgtacatataggcgagctatc
gagccgacaccaaacataacattaattcaaggcccgcctggtacgggtaaatcttgtgtg
attgcaaatttggtacaccagttgttatatgggaacgagattcgcatcctcgatcagaaa
gtattaatatgtgcacaaagcaatgcagccgttgacgttatagctgaaaaattgtttaat
atgggtcaaaaaaagttgccagatgtgcagtttcgattgattcgttttggcttgatggaa
cgcatcagccccaaggttcgacatgcaactttaccaaagatcattgaacgtaatcagata
aggaaacttaaagtggcttgcacaaatcttcaaattgatgataaaatcgacataaaggag
tacttacggaatgaaatcattcaaatcgaagctgatatcgaacatatgaaacagaaaaat
gtgaaaggaacggcgcaagaagaagagttgattgcaaaagtacgacaagtccaattaatg
cggaatatagtgaacggagttttgcgtccagaggatgagcgtagtctatacaattggcac
ctgaaaaatgctaatgtcgtgtgcacgacgttgtctagctgcgtgaaattatcacaatat
gtgaattattttgatgtttgtatcattgatgaggcaacacagtgtacagaaccatggact
ctaatgcctttaaaatttggcattaatacattggtgcttgtgggtgatacgcagcaactt
cccgcaacggtgctatcaaagaaagcttcagatttcggtcttggaacttcacttttcaca
cgtattcagcgctgtatagaatcggtcaacctcaaaaatgcagccaatggattaactgat
gaagaaaaaatattcttatccgatagcaatgatataatttttagcttgcaaacacaatac
cgcatgcatcctgaaatttgtaaatggccaaattcgtacttttacaaaaacgaactaatc
gatgatcccaaaactcatcagttcaaaacaccattgaagccattttcagtacttaatttg
acatatacgcaagatgaaaactgtcatcgcggtcaaattgctaacgagctagaggctaag
tttgtggctcggctggttaaaacgttggacggttatattcctatgaaatacaactcatat
ggtgtgataacgccctatgcacagcagcgaggggccttagaaaaggcgttgcgtaattat
ggattcttgaatgtaatggtaaataccatcgactcttatcaaggcatggaatgtgatgtc
atcataatttcaaatgcacgtaccactggcattggattcctggcaaactatcagcgcttg
aatgtggctttaactcgaccgaaaaagtgccttatactgtgtggaaacttcaaaaatttg
gaggcagtgccggcttggcgtagcctgttagcctcggcacgcgagcgcaaattgtaccat
gaacttagtgccgattgtatggacgatatgcaccgaagtgttattccaaagatcaagatt
tcaaaaccgacagtaacagcagatacggcgacagcaacaacaaggaaggagttactagcg
gtagttcctacattaaaccaatga
DBGET
integrated database retrieval system
