Rhagoletis zephyria (snowberry fruit fly): 108359939
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Entry
108359939 CDS
T08513
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03013
Nucleocytoplasmic transport
rze03015
mRNA surveillance pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108359939
09122 Translation
03013 Nucleocytoplasmic transport
108359939
03015 mRNA surveillance pathway
108359939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108359939
03041 Spliceosome [BR:
rze03041
]
108359939
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108359939
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108359939
Spliceosome [BR:
rze03041
]
Complex C
Other components
EJC/TREX
108359939
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108359939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
MoaE
Motif
Other DBs
NCBI-GeneID:
108359939
NCBI-ProteinID:
XP_017467516
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MADNDDLLDYEDEEQTETTAAEVPEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCG
FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVVYVLVMCHTRE
LAFQISKEYERFSKYMPAVKVGVFFGGLSIQKDEESLKGTTPHIVVGTPGRILALIRNKK
LNLKHLKHFILDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALA
QLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDEADAKILNEVQDRFDVNITELPDEIDLSSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgatgatcttttggattatgaggatgaggagcagaccgagaccactgcc
gccgaagtccctgaagcaccaaagaaagacgtgaaaggcacatacgtgtcaattcacagt
tcgggctttcgtgattttctgctgaagccggaaattttgcgtgcaatagttgactgcggt
ttcgagcatccgtctgaggtgcaacatgagtgtataccacaggcagtgctgggaatggat
attctctgtcaagccaagtcgggtatgggtaagactgctgtttttgtgcttgcaacttta
caacagctagaaccgacggaaaatgtggtatacgtgttggttatgtgtcatactcgtgaa
ttagcattccaaattagcaaggagtacgaacgattctccaagtatatgccagctgtgaag
gttggcgtattctttggcggcttatccattcagaaagatgaagaatcgttgaagggtaca
acgccacacattgttgttggcacacctggtcgtatccttgccttgatacgcaacaaaaaa
cttaatctaaagcacttgaaacactttattcttgacgaatgtgacaaaatgttggaacaa
cttgatatgcgtcgcgatgttcaggagatttttcgaagcactccacatggaaaacaagta
atgatgttttccgctacgttgagcaaggaaatacgtccggtgtgcaaaaaatttatgcaa
gatcccatggaagtttatgtggatgacgaagctaaattgacattgcacggattacaacag
cactatgttaaactgaaggagaacgagaaaaacaagaaattgtttgaattgttggatgta
ctcgaattcaatcaagttgtaattttcgtaaaatcagttcaacggtgcatggctctagct
cagttactaaccgaacaaaatttccccgcaattggcatacatcgtggaatgacacaagag
gaacgtttaaatcgctatcaacaattcaaggatttccaaaaacgcatattggtagccacc
aatctttttggtcgtggtatggatatcgaacgtgtgaatattgtatttaattatgatatg
cctgaagattcggacacttatcttcatcgtgtggctcgtgctggtcgttttggtaccaaa
ggtttggctataacctttgtctcggatgaggctgatgctaaaattttgaacgaagtgcaa
gacagatttgatgtcaacatcactgaattaccggatgagattgatctatcatcctatatc
gaaggacgataa
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