Rhagoletis zephyria (snowberry fruit fly): 108360901
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Entry
108360901 CDS
T08513
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rze03021
]
108360901
Transcription machinery [BR:
rze03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108360901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_2
HEAT_GCN1_C_2
HEAT_GCN1_C
ARM_ECM29
HEAT_GCN1
ARM_TBCD_2nd
Motif
Other DBs
NCBI-GeneID:
108360901
NCBI-ProteinID:
XP_017468851
LinkDB
All DBs
Position
Unknown
AA seq
1912 aa
AA seq
DB search
YWLYWIIPYLTAHILVLQSGCRLDRLFILLESGSSAVTRRAAAKQIGEVQKLYPHELHAL
LNRLIGYLHSTSWDTRIAASQAVEAILQNVPAWRPELYAAIKRETIKKEKERDEDSTAVA
SITGGGGGGEDDSCQSVATTATNSSEHSCSRDLLQQQQQQQRERLLSFAEFDLEQILHKG
ARLIGSEGIEFDLNETESAATPTGGSGANASATAAERLSRQRALLNEKLGLTQASKLGVN
LTDMITDEDVMSTGSNYNANEEKVPVEDILNIKPNSNLIPSNGQQLSCREMNRAKRKARQ
NINTTTSGGGVNATANSLSRSNNSNSSGMGTGKNGASMVDEPERKKLKADALERQEVFYT
LNDPVPDATGMWIDAFNWPLENFCARLYVDLFNPRWEVRHGAATALRELINNHASGAGKG
IGMTREEMQQHHNLWMEDAALRLLCVLCLDRFGDFVSDQVVAPVRETCAQVLGTIVKEMH
AEQVHQIVQLLIKLLKQKEWEVRHGGLLGLKYVFVVREDLLTIYVPQSINDILLALFDAV
DDVGAVAASTLIPIATWLPKLLNPVQVSSIVKMLWDLLLDQDELTSACNSFMGLLAAILC
LPSAGFWIQMEPMSTLVPRLWPFLSHSTSSVRKSTLLTLQTLTSCNLNKDQIEAMTSATP
STSSKLSTTANNNGNAVGQDSTNLPQLAIAINFDSKKLNLNLGVIDWQWKLLQDALRFIY
ERILVEPQSDIQEMATKVWKNLLFNADLGALLHAACPVVSSWICLAMQPARLAFDSSILI
HTSAVPQSPLGTSADANAAVTSRRRAQRNADDLGGHSMSSTAPQRYFLGGNEATPLDVRE
RNVVRARVTAARVLGALSKYLVQPAPGVTYTPNMESPMDCYTKVLLGHLNSRSAVQRIVC
GLIIAFWAQIDPSMRLAAPKLAEKLRTCVMEYVYYDEVAVSFTRLHQEAHDLIATLKQYK
IPINDLNFGRVLTLDQIEAIATTLTEGFSRYGLKPKLHETLEERRRGLRASFAQTSAEQC
AYNISAQAALAGAIVCMQCLPEKLNPVVKPLMESIKREECELLQQLSAEFLVQLMHQVCD
RNPSPNSKILTNLCTLLKSDPQFTPKITISQLSLKKTTLPQSAVASNNCVYYGILTLNLQ
QNNAQIGSAGSRAGAGGPSGSRGPGRPPLSEANATAENGVNAVNAAELKQFRVQRLGASC
AISKICLSFTVEIFSKMPVFEQILFAKIEEFTTAYPNMELLSDAPLDXQXTFKYSICNSV
CFHLSGCMSDPDESVRLLSTHCFATLVQLMPLDSRSKSIKNEIPSAELQERKIRDREFLD
YLFTPKTIPDYKVPIPLSVELRSYQQAGVNWLWFLNKYNLHGILCDDMGLGKTLQTICIL
AGEHYQRTMDREASLPSLVICPPTLTGHWVYEVEKFLERSKVLRPLHYVGLPIGREKLRC
QIGPCNLVVASYDTVRKDIDFFSNIHWNYCVLDEGHIIKNGKTKSSKAIKMLKARHRLIL
SGTPIQNNVLELWSLFDFLMPGFLGTEKQFIARYSRPILASRDSKSSSKEQEAGVLAMEA
LHRQVLPFLLRRVKEDVLTDLPPKITQDLLCELSPLQERLYEDFSRTHLNSHWKDCLDSL
GESDTISKKAHIFHDLRYLQNVCNHPKLVLTPKHSEYAKIAQELQQQQSSLDDIEHSAKL
PALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLNIVEHDLLRKHLPTVSYLRLDGSVPA
SLRQDIVHNFNTDPSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRI
GQKKVVNVYRLITQKTLEEKIMGLQKFKILTANTVVSSENASMDTMGTAQLFDLFNPNGN
DKEGANGAPASNAASGAPMSMNAIIENLPELWSEQQYDEEYDVTNFVQGLKK
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
tattggctatattggattataccttatttaactgcacacattcttgttctccaatccggt
tgcaggttggatcgtctcttcatattgctcgagtccggctcatcagcagtaacacgtcgc
gctgcggcaaaacaaattggcgaagtacagaagttgtacccccatgaattgcatgcactt
ctcaatcgtctaatcggatacttgcacagcacctcgtgggacactcgcatcgccgcttca
caagccgtagaggcgatattgcaaaatgtacccgcttggaggcctgaattatacgcggcc
ataaaacgtgagaccattaaaaaggagaaggaaagggacgaagattcgactgcagtagct
tccattacgggtggtggaggtggtggtgaggacgatagctgtcaatcggtggctaccact
gccacaaactccagcgaacatagctgcagtcgagatttgcttcagcaacaacagcagcag
caacgcgaacgattattatcgtttgcggaattcgatttggagcaaatattgcataaaggt
gctcgccttatcggttccgagggtattgaattcgatttgaacgaaacggagagcgctgca
acaccaacgggcggtagtggcgcaaatgcaagtgccacggctgcggagcggttgagtcga
cagcgtgcgctgctcaatgagaaactagggctgacgcaggcctcgaagttgggcgtgaat
ctgacggatatgatcacagatgaggatgtaatgagtaccggaagcaactacaatgccaac
gaggagaaggtgcccgttgaggatatactgaatataaaacccaattccaatttgattcct
tccaatgggcaacagcttagctgccgtgaaatgaatcgcgccaagcgcaaagcgcgacaa
aatataaatacaacaaccagtggcggcggtgtaaatgcgactgcaaatagtttaagtcga
agcaataacagcaacagcagtggcatgggaaccggtaaaaatggtgccagtatggtcgac
gaacccgaacgcaaaaaattgaaagcagatgcgctagagcgacaggaggttttctataca
ttaaatgatcccgtgccggatgcgactggtatgtggattgatgccttcaattggccattg
gaaaacttttgtgcacgtctctatgtcgacctcttcaacccgagatgggaggtgcgtcac
ggtgcagcgacagctttgcgtgagcttattaataatcacgccagcggtgcaggcaaaggt
atcggtatgacacgtgaagagatgcagcaacatcacaatctctggatggaggatgctgcg
ttgcgtctgctgtgcgtactatgcctggatcgtttcggtgactttgtatccgatcaggtg
gtggcgccagtacgtgaaacatgtgcgcaggtgctgggaactattgtaaaagaaatgcat
gcagagcaagtgcatcaaatagtgcagttgttgattaaattgctgaagcagaaggagtgg
gaagtccgtcacggcggcctactgggtttgaagtatgtctttgtagtgcgcgaagatctt
ttgacgatttatgtgccgcaatcaataaacgacatactgttggcattattcgatgccgta
gatgatgtgggcgccgtagccgcatcgactctgattccgattgcaacctggttgccgaaa
ttgttaaacccagttcaggtctcgtcgattgtgaagatgctatgggatctactcctggat
caggatgaattgacgagcgcatgtaatagttttatggggctgctagcggcaatactgtgt
ctacccagtgccggattttggattcaaatggaaccaatgtccacgctggtgccgcgactt
tggccctttctttcgcatagcaccagttcggtgcgaaaatcgactttactgacactccaa
actctcaccagttgcaatttgaataaggaccaaattgaagccatgaccagtgccactccc
tccacaagctcaaaacttagcacaaccgcaaataataatggtaacgccgtgggtcaggac
tctaccaatttgccgcagttggccattgccataaatttcgattccaaaaaattaaactta
aatctaggcgtcatcgattggcagtggaaactgttgcaggacgcgctacgcttcatttac
gaacgcattctagtcgaacctcagtcagatatacaggagatggcaacgaaagtttggaaa
aatctattgtttaacgctgatttgggagcgttattgcatgccgcctgtccggtcgtttcg
tcgtggatttgcttagccatgcagccagccaggcttgctttcgactcatccattctaata
cacacctccgctgtgccgcaaagccccttaggcacatcagccgatgcaaacgcagctgta
acatcccgacgacgggcgcagcgtaatgccgatgatttgggtggccactccatgagcagt
acagcaccgcaaagatactttcttggcggcaatgaggcgaccccattggatgttcgtgag
cgtaatgtggtgcgtgcgcgtgtaacggcagcacgagtgctgggcgcgctctcgaaatat
ctggtgcagccggctccaggagtgacttatacgccaaatatggaatcccccatggattgt
tatacaaaagtgttgttggggcacttaaattcgcggtcggcagtgcagcgcattgtatgc
ggtctgatcatcgcattctgggcacaaatagatccttccatgcgcctagccgcaccgaag
ctggcagagaaattacgcacgtgtgtcatggagtatgtttactatgacgaagtagccgtt
tcgtttacaaggttgcaccaggaggctcatgatctcattgctacattgaagcaatacaaa
atacccataaatgatttaaattttggtcgcgttctcacattagatcaaatagaggcaatt
gccaccaccctgaccgaggggtttagtcgctatgggcttaagccaaaattacacgaaaca
cttgaggagcgcaggcgcggcttgcgagcctctttcgcgcagacttcagcagaacaatgc
gcctataatataagcgcacaagcggcattggcgggtgccattgtctgcatgcaatgctta
ccagagaagttgaatccggttgtaaaaccgcttatggagtcgataaaacgagaagagtgt
gagttattgcaacaactttcagcggaattcctggtgcagctaatgcatcaggtgtgtgat
agaaatcctagtcctaatagtaaaatactgactaacttgtgtacgctgctgaagagtgat
cctcagtttacgcccaaaattactataagccaattgtcattgaaaaagactacattgccc
cagtcagcggttgcttcgaataactgcgtttattacggcattttaacattaaatttgcaa
caaaataatgcacaaattggaagcgcaggtagtcgtgcaggtgctgggggaccgagtggc
tcacgtggcccaggtaggccgccactaagtgaagcgaatgccacagcggaaaatggtgtc
aatgcagtaaacgcggcggaattaaaacagttccgcgttcaacgcctgggcgcctcttgt
gccatatcgaaaatttgcttaagcttcacagtagagatcttttccaaaatgccggttttc
gagcaaattttgtttgctaaaattgaggaatttacaacagcttatccgaatatggaatta
ctatcagatgctccgctagattagcaantaactttcaaatattccatatgcaattctgtg
tgtttccacctttcaggttgcatgagcgatcccgatgaatctgtacgtttgctttccacg
cactgctttgccacacttgttcaacttatgccattagattcgcgtagcaagtcaatcaag
aatgagattccttccgctgagttacaggagcgaaagatacgcgatcgcgaatttcttgat
tacctattcacgccaaagactatacccgactacaaagtaccgatacccttatcggtagag
cttcgttcttaccaacaagcaggcgttaactggctatggtttttgaacaaatacaatttg
catggcattctttgcgatgacatgggtttgggtaagacacttcaaaccatttgcattctc
gcaggcgaacactaccagcgcactatggacagagaagcatcactgccaagcctagtgatt
tgtccaccgacgctcacaggtcattgggtctatgaggtggaaaaattcctagaaagatcg
aaagttttacgtccactacattacgtaggtttgcctatcggacgtgaaaaactgcgctgc
caaattgggccgtgtaatctggtcgtggcatcatacgacacagtacgaaaggatatagat
ttcttcagcaatatacactggaactactgtgtgctggacgaaggtcacattataaagaac
ggcaagacaaaaagttcgaaggccattaaaatgcttaaggccagacatcggctaatactt
tctggtacgcctattcaaaacaatgtattggagctttggtccctttttgacttcctgatg
cctggttttcttggcactgagaaacaatttattgcgcgttacagtcggccaatattagct
tcccgcgattcaaagagttcctccaaggaacaggaagctggcgtcttagcaatggaggca
ttacatcgccaggtattgccattcttgttgcgtcgcgtgaaggaggatgtgttgaccgat
ttaccacctaaaatcacacaagacttgttgtgcgaattgagtccgttacaagaacgttta
tatgaggacttcagtcgtacacatttgaattcacattggaaggattgtttggatagcctg
ggtgagagtgataccatcagcaagaaggctcacattttccacgatttgcgttatttacaa
aacgtttgcaatcacccgaaattggtgttgacaccaaagcattcggagtacgcaaagatt
gcgcaggagttgcagcaacagcagagctcacttgatgatatagagcactcggcgaaattg
ccagcactgaaacaattgttgctcgattgcggcattggcgtccaaactgaatcggtcagt
caacatcgtgcgcttattttctgtcaactaaaggccatgttaaatatagtggaacacgat
ttgttgcgcaaacatttgccaacggtgtcttatttacgcctagacggcagcgtgccggca
tcactgcgtcaagacattgtgcacaacttcaacaccgatccgagtatcgatgtgctactc
ctcaccacacaggtcggcggacttggcttgaatttgactggcgctgacacagtcatattt
gtcgagcacgactggaatccaatgaaggatctacaagccatggatcgtgcgcatcgtatt
ggccagaagaaagtggtgaatgtatatcggttgataactcaaaaaacactcgaagagaaa
ataatgggattacaaaagtttaaaatcctcaccgccaataccgtggtcagttcagagaac
gcctcgatggatacaatgggcacagcacagctcttcgatttatttaatccaaatggcaat
gacaaagagggagcaaatggtgcgccagcatcgaatgcggccagtggtgcaccaatgtct
atgaatgcaatcatcgaaaatctgccagagctatggtcggaacagcagtacgatgaggaa
tacgatgtgacaaatttcgtacagggcttaaagaagtag
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